Os11g0706600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
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Os11g0706600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thaumatin, pathogenesis-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.23 | 0.423 | 3.2 | 0.0532 | 0.503 | 2.38 | 0.602 | -1.12 | 0.104 | 22.3 | 0.8618 | 636 | -- | -- |
| 81.43 | 0.42 | 3.19 | 0.069 | 0.495 | 2.2 | 0.505 | -- | 0.135 | 22.2 | 0.8774 | 634 | -- | -- |
| 82.49 | 0.423 | 3.19 | 0.0511 | 0.485 | 2.08 | -- | -0.0799 | 0.0992 | 22.1 | 0.9313 | 636 | -- | -- |
| 82.48 | 0.423 | 3.19 | 0.0547 | 0.495 | 2.07 | -- | -- | 0.105 | 22.1 | 0.9246 | 636 | -- | -- |
| 96.77 | 0.458 | 3.17 | 0.0568 | -- | 1.97 | -- | 0.897 | 0.0951 | -- | 0.9586 | 635 | -- | -- |
| 114.9 | 0.503 | 3.2 | 0.315 | 0.626 | -- | 1.08 | -- | 0.0593 | 22.4 | -- | -- | -- | -- |
| 119.59 | 0.512 | 3.2 | 0.273 | 0.624 | -- | -- | -- | 0.0573 | 22.2 | -- | -- | -- | -- |
| 96.81 | 0.458 | 3.18 | 0.0434 | -- | 2.24 | -- | -- | 0.11 | -- | 0.9481 | 635 | -- | -- |
| 82.55 | 0.423 | 3.19 | -- | 0.495 | 2.09 | -- | -- | 0.101 | 22.1 | 0.9224 | 636 | -- | -- |
| 143.21 | 0.559 | 3.19 | 0.282 | -- | -- | -- | -- | 0.0587 | -- | -- | -- | -- | -- |
| 121.55 | 0.516 | 3.21 | -- | 0.625 | -- | -- | -- | 0.027 | 22.2 | -- | -- | -- | -- |
| 96.85 | 0.458 | 3.18 | -- | -- | 2.25 | -- | -- | 0.106 | -- | 0.9468 | 635 | -- | -- |
| 145.3 | 0.563 | 3.19 | -- | -- | -- | -- | -- | 0.0274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.41 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 7 | 82.88 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 9 |
| 23 | 83.45 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 25 | 83.48 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 5 |
| 45 | 84.91 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 16 | NA |
| 57 | 85.43 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 59 | 85.50 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 79 | 85.97 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 90 | 86.17 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 95 | 86.23 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 134 | 86.69 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 141 | 86.88 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 173 | 88.02 | wind | 1.0 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 192 | 88.67 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 198 | 88.88 | wind | 1.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 200 | 88.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 212 | 89.14 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 240 | 89.51 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 322 | 90.59 | precipitation | 0.1 | 720 | > th | dose dependent | no | NA | NA |
| 327 | 90.60 | precipitation | 0.1 | 720 | > th | dose independent | sin | 16 | NA |
| 368 | 91.60 | precipitation | 0.1 | 720 | < th | dose independent | sin | 19 | NA |
| 369 | 91.60 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 19 | NA |
| 372 | 91.62 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 378 | 91.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 382 | 91.80 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 403 | 92.01 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 404 | 92.01 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 442 | 92.30 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 469 | 92.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 470 | 92.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 480 | 92.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 490 | 92.61 | precipitation | 0.1 | 720 | < th | dose independent | sin | 23 | NA |
| 493 | 92.61 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 23 | NA |
| 533 | 92.82 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 16 |
| 542 | 92.85 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 602 | 93.22 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 24 | 20 |
| 611 | 93.27 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 18 |
| 672 | 93.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 785 | 94.07 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 8 |
| 789 | 94.07 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 801 | 94.11 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 802 | 94.11 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 804 | 94.12 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 826 | 94.19 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 872 | 94.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 936 | 94.58 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 940 | 94.58 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 16 |