FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0706200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0261) R2 : 0.0221
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.177 (0.055) R2dN8 : 0.0286 R2N8 : 0.0221
σ : 0.492
deviance : 110.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.45 0.473 3.63 -0.128 0.0441 2.07 -0.724 -3.71 0.225 0.496 0.1887 585 -- --
102.98 0.473 3.6 -0.081 0.0423 1.05 -0.596 -- 0.21 23.5 0.3473 584 -- --
103.55 0.474 3.63 -0.079 0.0715 1.87 -- -3.45 0.226 23.6 0.0003196 584 -- --
104.61 0.476 3.61 -0.0398 0.0584 0.962 -- -- 0.211 21.3 7.156e-06 575 -- --
103.76 0.474 3.62 -0.0828 -- 1.86 -- -3.29 0.225 -- 0.03826 589 -- --
109.67 0.491 3.61 0.0414 0.071 -- -0.45 -- 0.18 0.0777 -- -- -- --
110.36 0.492 3.61 0.061 0.0946 -- -- -- 0.184 21.4 -- -- -- --
104.86 0.477 3.6 -0.0505 -- 0.978 -- -- 0.211 -- 0.09854 575 -- --
104.63 0.476 3.6 -- 0.0737 0.942 -- -- 0.216 20.3 0.2867 575 -- --
110.89 0.492 3.61 0.0615 -- -- -- -- 0.183 -- -- -- -- --
110.46 0.492 3.61 -- 0.0947 -- -- -- 0.177 21.5 -- -- -- --
104.93 0.477 3.6 -- -- 0.955 -- -- 0.216 -- 0.3477 576 -- --
110.99 0.492 3.61 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.97 humidity 90 14400 > th dose independent rect. 2 8
2 96.03 wind 9 14400 < th dose independent rect. 6 5
7 96.21 humidity 90 14400 > th dose independent rect. 2 20
8 96.27 humidity 90 14400 < th dose independent rect. 3 7
15 96.41 wind 3 43200 > th dose independent rect. 6 1
16 96.41 wind 3 43200 < th dose independent rect. 6 1
22 96.50 humidity 90 14400 > th dose dependent rect. 19 2
43 96.77 wind 9 14400 < th dose independent rect. 9 2
55 96.91 humidity 90 14400 > th dose independent rect. 7 1
56 96.91 humidity 90 14400 > th dose dependent rect. 7 1
57 96.92 humidity 90 14400 > th dose independent rect. 19 2
62 96.94 wind 5 43200 < th dose dependent rect. 6 1
66 96.96 humidity 90 14400 < th dose independent rect. 7 1
68 96.97 humidity 90 14400 < th dose independent rect. 2 20
88 97.07 humidity 80 14400 > th dose dependent rect. 8 3
91 97.09 humidity 80 14400 > th dose independent rect. 8 7
101 97.16 humidity 80 14400 < th dose independent rect. 13 2
104 97.17 humidity 90 14400 > th dose dependent rect. 3 19
108 97.18 humidity 90 14400 > th dose independent rect. 16 18
116 97.19 wind 1 43200 > th dose dependent rect. 6 1
117 97.19 humidity 80 14400 > th dose dependent rect. 9 1
131 97.23 humidity 90 14400 > th dose independent rect. 7 22
132 97.23 humidity 80 14400 > th dose dependent rect. 7 8
149 97.27 humidity 80 14400 > th dose independent rect. 13 2
151 97.27 humidity 90 14400 > th dose independent rect. 13 21
191 97.34 humidity 90 14400 > th dose dependent sin 17 NA
241 97.41 humidity 90 14400 > th dose dependent rect. 7 16
242 97.42 humidity 90 14400 > th dose independent no NA NA
264 97.46 wind 9 14400 > th dose independent rect. 5 6
271 97.46 humidity 90 14400 > th dose dependent rect. 7 18
279 97.49 humidity 90 14400 > th dose independent sin 1 NA
285 97.50 humidity 90 14400 > th dose independent rect. 16 7
293 97.50 humidity 90 14400 > th dose dependent rect. 7 21
309 97.53 humidity 90 14400 > th dose independent rect. 9 23
314 97.54 humidity 80 14400 < th dose independent rect. 10 5
331 97.56 humidity 90 14400 < th dose independent sin 2 NA
336 97.57 humidity 80 14400 > th dose independent rect. 10 1
352 97.60 humidity 90 14400 < th dose independent rect. 19 2
399 97.66 humidity 90 14400 > th dose independent sin 17 NA
413 97.67 humidity 90 14400 < th dose independent rect. 18 16
489 97.75 humidity 90 14400 > th dose independent rect. 15 14
495 97.75 humidity 80 14400 > th dose dependent sin 0 NA
549 97.80 humidity 90 14400 > th dose independent rect. 13 16
671 97.91 humidity 90 14400 < th dose independent rect. 7 23
699 97.95 humidity 80 14400 < th dose independent rect. 10 1
790 98.04 humidity 90 14400 < th dose independent no NA NA
806 98.06 wind 9 14400 > th dose independent rect. 9 2
844 98.10 humidity 70 14400 > th dose dependent rect. 13 1
854 98.11 humidity 90 14400 > th dose dependent rect. 15 20
989 98.24 humidity 90 14400 > th dose dependent no NA NA