Os11g0706000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os11g0706000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.55 | 0.592 | 4.23 | 1.96 | 0.238 | -1.31 | 0.0261 | 3.26 | 0.445 | 0.36 | 24.51 | 1124 | -- | -- |
| 163.41 | 0.595 | 4.27 | 1.39 | 0.128 | -0.958 | 0.299 | -- | 0.454 | 0.707 | 22.32 | 6746 | -- | -- |
| 158.47 | 0.586 | 4.23 | 1.95 | 0.259 | -1.34 | -- | 3.31 | 0.443 | 23.9 | 24.46 | 1083 | -- | -- |
| 160.43 | 0.59 | 4.34 | 1.18 | 0.0902 | -1.02 | -- | -- | 0.138 | 0.582 | 25.69 | 3320 | -- | -- |
| 160.6 | 0.59 | 4.22 | 2.07 | -- | -1.19 | -- | 3.4 | 0.42 | -- | 25.4 | 1319 | -- | -- |
| 192.23 | 0.65 | 4.35 | 0.883 | 0.00835 | -- | 0.107 | -- | 0.115 | 3.25 | -- | -- | -- | -- |
| 192.26 | 0.649 | 4.35 | 0.881 | 0.0186 | -- | -- | -- | 0.114 | 7 | -- | -- | -- | -- |
| 160.87 | 0.591 | 4.34 | 1.19 | -- | -1 | -- | -- | 0.145 | -- | 25.74 | 3318 | -- | -- |
| 194.28 | 0.649 | 4.38 | -- | 0.105 | -0.774 | -- | -- | -0.0196 | 22.9 | 27.48 | 2135 | -- | -- |
| 192.27 | 0.648 | 4.35 | 0.882 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 212.72 | 0.682 | 4.37 | -- | 0.0318 | -- | -- | -- | 0.0156 | 5.19 | -- | -- | -- | -- |
| 194.77 | 0.65 | 4.38 | -- | -- | -0.726 | -- | -- | -0.0463 | -- | 27.8 | 3285 | -- | -- |
| 212.77 | 0.681 | 4.37 | -- | -- | -- | -- | -- | 0.0163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 4 | 156.10 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 6 | 156.17 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 7 | 156.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 10 | 157.17 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 17 | 157.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 26 | 158.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 33 | 159.03 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 39 | 159.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 57 | 159.45 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 67 | 159.51 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 75 | 159.59 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 83 | 159.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 84 | 159.63 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 100 | 159.71 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 115 | 159.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 123 | 159.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 125 | 159.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 127 | 159.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 135 | 159.82 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 144 | 159.83 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 152 | 159.84 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 171 | 159.88 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 182 | 159.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 183 | 159.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 201 | 159.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 207 | 159.97 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 231 | 159.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 243 | 160.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 248 | 160.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 255 | 160.04 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 277 | 160.09 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 295 | 160.14 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 301 | 160.17 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 316 | 160.23 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 334 | 160.28 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 336 | 160.28 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 383 | 160.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 19 |
| 385 | 160.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 414 | 160.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 436 | 160.51 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 18 | NA |
| 542 | 160.63 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 558 | 160.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 586 | 160.69 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 648 | 160.79 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 735 | 160.98 | temperature | 30.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 770 | 161.09 | temperature | 30.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 811 | 161.16 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 825 | 161.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 834 | 161.24 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 898 | 161.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 916 | 161.43 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 931 | 161.47 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |