Os11g0705900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os11g0705900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.98 | 0.438 | 7.16 | 2.65 | 1.99 | 0.497 | -0.391 | -1.15 | 0.867 | 19.9 | 92 | 777 | -- | -- |
| 89.14 | 0.44 | 7.16 | 2.54 | 2.03 | 0.557 | 0.149 | -- | 0.86 | 19.9 | 90.76 | 774 | -- | -- |
| 87.33 | 0.435 | 7.16 | 2.64 | 2 | 0.502 | -- | -0.966 | 0.869 | 19.9 | 92 | 786 | -- | -- |
| 89.16 | 0.44 | 7.15 | 2.53 | 2.03 | 0.537 | -- | -- | 0.854 | 19.9 | 91 | 774 | -- | -- |
| 281.78 | 0.786 | 7.14 | 2.6 | -- | -0.286 | -- | -0.703 | 0.697 | -- | 92 | 786 | -- | -- |
| 93.67 | 0.454 | 7.17 | 2.57 | 1.88 | -- | -0.0157 | -- | 0.761 | 19.8 | -- | -- | -- | -- |
| 93.67 | 0.453 | 7.17 | 2.57 | 1.88 | -- | -- | -- | 0.761 | 19.8 | -- | -- | -- | -- |
| 193.31 | 0.648 | 7.18 | 2.28 | -- | -1.71 | -- | -- | 0.418 | -- | 64.87 | 611 | -- | -- |
| 202.74 | 0.663 | 7.19 | -- | 1.87 | 2.27 | -- | -- | 0.655 | 19.9 | -42.48 | 47520 | -- | -- |
| 285.99 | 0.79 | 7.12 | 2.55 | -- | -- | -- | -- | 0.735 | -- | -- | -- | -- | -- |
| 268.41 | 0.766 | 7.24 | -- | 1.87 | -- | -- | -- | 0.474 | 19.9 | -- | -- | -- | -- |
| 359.51 | 0.883 | 7.21 | -- | -- | -1.84 | -- | -- | 0.374 | -- | 61.92 | 605 | -- | -- |
| 457.83 | 0.999 | 7.19 | -- | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.87 | wind | 7 | 10 | > th | dose independent | rect. | 13 | 1 |
| 2 | 84.93 | wind | 7 | 90 | > th | dose independent | rect. | 13 | 1 |
| 10 | 85.51 | wind | 7 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 13 | 85.81 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 17 | 86.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 18 | 86.14 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 24 | 86.38 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 31 | 86.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 35 | 86.63 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 36 | 86.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 49 | 86.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 52 | 86.91 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 57 | 86.95 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 78 | 87.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 92 | 87.22 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 3 |
| 105 | 87.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 110 | 87.32 | wind | 5 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 121 | 87.41 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 128 | 87.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 136 | 87.47 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 160 | 87.54 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 163 | 87.54 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 6 |
| 175 | 87.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 228 | 87.74 | humidity | 90 | 1440 | > th | dose dependent | sin | 19 | NA |
| 230 | 87.75 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 241 | 87.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 253 | 87.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 295 | 87.80 | radiation | 30 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 302 | 87.84 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 342 | 87.93 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 4 |
| 358 | 87.96 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 379 | 88.02 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 380 | 88.02 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 391 | 88.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 399 | 88.08 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 9 |
| 411 | 88.09 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 415 | 88.10 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 424 | 88.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 425 | 88.12 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 434 | 88.13 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 435 | 88.13 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 438 | 88.14 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 1 |
| 441 | 88.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 451 | 88.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 9 |
| 470 | 88.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 16 | 11 |
| 473 | 88.18 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 496 | 88.21 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 10 |
| 498 | 88.21 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 506 | 88.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 517 | 88.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 520 | 88.24 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 559 | 88.29 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 564 | 88.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 587 | 88.32 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 606 | 88.33 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 613 | 88.34 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 653 | 88.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 660 | 88.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 662 | 88.37 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 692 | 88.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 694 | 88.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 702 | 88.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 712 | 88.41 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 730 | 88.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 737 | 88.43 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 9 |
| 738 | 88.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 750 | 88.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 772 | 88.46 | humidity | 60 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 821 | 88.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 15 |
| 824 | 88.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 825 | 88.50 | wind | 1 | 43200 | > th | dose dependent | sin | 15 | NA |
| 835 | 88.50 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 839 | 88.51 | wind | 9 | 43200 | < th | dose dependent | sin | 15 | NA |
| 841 | 88.51 | humidity | 60 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 878 | 88.54 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 897 | 88.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 898 | 88.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 899 | 88.55 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 903 | 88.55 | temperature | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 925 | 88.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 24 | 11 |
| 947 | 88.58 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 962 | 88.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 982 | 88.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 997 | 88.60 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 9 |