Os11g0705200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Scarecrow-like 9 (Fragment).
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Os11g0705200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Scarecrow-like 9 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.62 | 0.804 | 7.55 | 4.32 | 1.31 | -1.92 | 0.564 | 2.33 | 0.819 | 23.4 | 25.72 | 1345 | -- | -- |
| 299.86 | 0.807 | 7.55 | 4.01 | 1.3 | -1.71 | 0.729 | -- | 0.905 | 23.4 | 25.6 | 1355 | -- | -- |
| 293.91 | 0.798 | 7.55 | 4.34 | 1.3 | -1.92 | -- | 2.49 | 0.815 | 23.4 | 25.81 | 1351 | -- | -- |
| 295.73 | 0.801 | 7.65 | 3.65 | 1.29 | -1.67 | -- | -- | 0.587 | 23.5 | 26.4 | 1349 | -- | -- |
| 387.75 | 0.917 | 7.52 | 4.39 | -- | -1.9 | -- | 2.71 | 0.846 | -- | 25.7 | 1535 | -- | -- |
| 414.12 | 0.954 | 7.66 | 3.13 | 1.14 | -- | 0.443 | -- | 0.535 | 22.9 | -- | -- | -- | -- |
| 414.93 | 0.954 | 7.66 | 3.11 | 1.14 | -- | -- | -- | 0.533 | 23 | -- | -- | -- | -- |
| 390.41 | 0.92 | 7.6 | 3.69 | -- | -1.61 | -- | -- | 0.696 | -- | 25.8 | 1536 | -- | -- |
| 621.71 | 1.16 | 7.76 | -- | 1.38 | -1.08 | -- | -- | -0.0189 | 23.9 | 28.3 | 1244 | -- | -- |
| 495.08 | 1.04 | 7.63 | 3.14 | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
| 670.09 | 1.21 | 7.74 | -- | 1.16 | -- | -- | -- | 0.186 | 23.2 | -- | -- | -- | -- |
| 708.88 | 1.24 | 7.79 | -- | -- | -1.01 | -- | -- | 0.0401 | -- | 34.1 | 1335 | -- | -- |
| 754.62 | 1.28 | 7.71 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 58 | 289.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 67 | 290.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 100 | 291.36 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 123 | 292.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 125 | 292.07 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 143 | 292.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 234 | 294.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 328 | 295.40 | humidity | 70 | 1440 | > th | dose independent | sin | 14 | NA |
| 372 | 295.79 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 442 | 297.10 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 448 | 297.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 457 | 297.54 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 466 | 297.72 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 479 | 298.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 549 | 298.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 553 | 299.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 617 | 299.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 627 | 300.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 628 | 300.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 629 | 300.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 650 | 300.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 652 | 300.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 678 | 300.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 697 | 300.48 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 708 | 300.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 725 | 300.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 748 | 300.98 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 752 | 301.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 785 | 301.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 790 | 301.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 793 | 301.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 821 | 301.67 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 835 | 301.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 869 | 302.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 884 | 302.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 918 | 302.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 923 | 302.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 944 | 302.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 968 | 302.60 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 20 |