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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0703500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0374) R2 : 0.465
β1 : -1.34 (0.148) R2dD : 0.119 R2D : 0.219
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.65 (0.214) R2dE : 0.219 R2E : 0.346
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.223 (0.0818) R2dN8 : 0.0124 R2N8 : 0.011
σ : 0.695
deviance : 222.38
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 40.4
memory length : 4020
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 0.235

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.71 0.667 3.84 -1.28 0.497 3.83 -1.26 3.82 -0.248 2.74 40.22 4060 15 0.234
209.88 0.675 3.77 -0.998 0.495 3.41 -1.01 -- -0.233 2.89 40.22 4128 15.1 0.215
206.91 0.67 3.83 -1.26 0.491 3.68 -- 3.27 -0.237 2.21 40.19 4014 15 0.243
207.76 0.671 3.79 -1.36 0.494 2.63 -- -- -0.229 2.13 40.35 4085 15.1 0.233
221.31 0.693 3.83 -1.23 -- 3.75 -- 3.46 -0.225 -- 40.35 4049 15 0.233
275.16 0.778 3.84 -2.13 0.519 -- -1.33 -- -0.491 2.71 -- -- -- --
281.01 0.785 3.84 -2.1 0.513 -- -- -- -0.482 2.17 -- -- -- --
222.38 0.695 3.78 -1.34 -- 2.65 -- -- -0.223 -- 40.4 4020 15 0.235
249.38 0.736 3.73 -- 0.526 3.41 -- -- -0.0533 2.23 41.8 4128 15.1 0.216
296.71 0.805 3.83 -2.08 -- -- -- -- -0.47 -- -- -- -- --
397.31 0.932 3.78 -- 0.473 -- -- -- -0.248 2.08 -- -- -- --
262.34 0.754 3.73 -- -- 3.41 -- -- -0.051 -- 41.88 4125 15.1 0.222
410.74 0.946 3.78 -- -- -- -- -- -0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.60 precipitation 0.1 14400 < th dose independent rect. 4 1
2 203.60 precipitation 0.1 14400 < th dose dependent rect. 4 1
3 203.86 humidity 60.0 14400 > th dose independent rect. 4 4
4 204.00 precipitation 0.1 14400 > th dose independent rect. 4 1
7 204.08 precipitation 0.1 14400 > th dose dependent rect. 4 1
9 204.36 humidity 60.0 14400 > th dose independent rect. 1 7
13 205.66 radiation 40.0 4320 > th dose dependent rect. 15 1
29 206.36 humidity 70.0 14400 < th dose dependent rect. 21 10
31 207.03 humidity 60.0 14400 < th dose independent rect. 6 1
33 207.03 humidity 60.0 14400 < th dose independent rect. 20 1
35 207.03 radiation 20.0 14400 > th dose independent rect. 17 1
86 207.03 humidity 60.0 14400 < th dose dependent rect. 6 1
88 207.03 humidity 60.0 14400 < th dose dependent rect. 20 1
90 207.03 radiation 20.0 14400 > th dose dependent rect. 17 1
150 207.90 humidity 60.0 14400 > th dose independent rect. 7 1
151 208.04 humidity 60.0 14400 > th dose independent rect. 23 9
152 208.10 humidity 60.0 14400 > th dose independent rect. 20 12
153 208.12 radiation 40.0 4320 > th dose independent rect. 15 1
169 208.32 temperature 15.0 14400 < th dose independent rect. 9 3
170 208.34 temperature 15.0 14400 > th dose independent rect. 9 3
198 209.50 temperature 15.0 14400 < th dose dependent rect. 4 1
204 209.84 radiation 1.0 14400 < th dose dependent rect. 9 1
218 210.55 radiation 40.0 43200 > th dose dependent rect. 15 1
241 210.90 humidity 90.0 14400 < th dose dependent rect. 21 1
258 211.21 humidity 50.0 14400 < th dose dependent rect. 9 1
262 211.26 radiation 40.0 14400 < th dose dependent rect. 18 8
288 211.60 humidity 70.0 14400 > th dose independent rect. 21 1
295 211.77 humidity 50.0 14400 > th dose dependent rect. 21 1
320 212.03 temperature 15.0 14400 < th dose dependent rect. 23 1
339 212.08 humidity 70.0 14400 < th dose dependent rect. 16 1
362 212.35 temperature 15.0 14400 < th dose independent rect. 11 1
371 212.50 wind 9.0 43200 > th dose dependent rect. 14 1
374 212.54 radiation 20.0 14400 < th dose independent rect. 17 13
383 212.67 radiation 40.0 14400 < th dose dependent rect. 18 4
388 212.70 radiation 20.0 14400 < th dose independent rect. 17 5
399 212.88 radiation 20.0 14400 < th dose independent rect. 17 3
463 213.30 radiation 40.0 14400 < th dose independent rect. 16 10
476 213.42 wind 9.0 43200 > th dose independent rect. 14 1
482 213.50 temperature 15.0 14400 > th dose independent rect. 11 1
488 213.56 wind 9.0 43200 < th dose independent rect. 14 1
490 213.62 radiation 20.0 14400 < th dose independent rect. 17 7
497 213.82 radiation 1.0 4320 < th dose independent rect. 4 1
505 213.93 temperature 15.0 14400 < th dose dependent sin 8 NA
512 214.03 radiation 10.0 4320 < th dose dependent rect. 4 1
532 214.33 humidity 90.0 14400 < th dose dependent rect. 16 7
551 214.69 humidity 60.0 43200 < th dose dependent rect. 18 1
577 214.92 wind 9.0 43200 < th dose independent rect. 12 3
604 215.05 radiation 20.0 14400 < th dose independent rect. 17 9
651 215.62 radiation 40.0 14400 < th dose independent rect. 16 14
656 215.66 humidity 50.0 14400 > th dose dependent rect. 16 7
668 215.74 radiation 1.0 4320 > th dose independent rect. 4 1
678 215.74 radiation 1.0 4320 > th dose dependent rect. 4 1
690 215.75 humidity 70.0 14400 < th dose independent rect. 16 1
692 215.78 radiation 40.0 14400 < th dose independent rect. 16 6
696 215.79 humidity 70.0 14400 < th dose independent rect. 15 16
716 215.96 radiation 1.0 14400 < th dose independent rect. 8 2
717 215.97 humidity 70.0 14400 < th dose independent rect. 15 7
750 216.22 radiation 1.0 14400 > th dose independent rect. 8 2
759 216.26 humidity 80.0 14400 < th dose independent rect. 17 6
804 216.46 humidity 70.0 14400 > th dose independent rect. 15 16
854 216.68 humidity 70.0 14400 > th dose independent rect. 15 10
862 216.69 humidity 70.0 14400 > th dose independent rect. 15 8
879 216.75 humidity 50.0 43200 < th dose independent rect. 17 18
920 217.01 humidity 60.0 14400 > th dose independent rect. 15 2
927 217.03 humidity 80.0 14400 > th dose independent rect. 17 6
944 217.13 radiation 30.0 43200 < th dose dependent rect. 23 6
946 217.14 humidity 90.0 14400 < th dose dependent sin 14 NA
952 217.18 humidity 70.0 14400 < th dose independent sin 14 NA
989 217.23 radiation 10.0 43200 < th dose independent rect. 4 1