Os11g0701700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0701700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.92 | 0.409 | 8.66 | 0.683 | 0.0659 | 1.83 | 0.694 | -0.224 | 0.044 | 7.28 | 25 | 717 | -- | -- |
| 75.98 | 0.406 | 8.67 | 0.647 | 0.0659 | 1.85 | 0.654 | -- | 0.0355 | 7.11 | 24.97 | 718 | -- | -- |
| 77.01 | 0.409 | 8.67 | 0.65 | 0.082 | 1.86 | -- | 0.0863 | 0.0341 | 5.33 | 25.03 | 741 | -- | -- |
| 77.02 | 0.409 | 8.67 | 0.662 | 0.0813 | 1.86 | -- | -- | 0.0375 | 5.4 | 25.05 | 740 | -- | -- |
| 77.26 | 0.409 | 8.67 | 0.65 | -- | 1.87 | -- | 0.0732 | 0.0408 | -- | 25.16 | 703 | -- | -- |
| 127.39 | 0.529 | 8.75 | 0.123 | 0.308 | -- | 0.443 | -- | -0.352 | 8.92 | -- | -- | -- | -- |
| 128.03 | 0.53 | 8.75 | 0.139 | 0.305 | -- | -- | -- | -0.351 | 9.21 | -- | -- | -- | -- |
| 77.27 | 0.409 | 8.67 | 0.663 | -- | 1.86 | -- | -- | 0.0422 | -- | 25.17 | 701 | -- | -- |
| 87.61 | 0.436 | 8.7 | -- | 0.0835 | 1.65 | -- | -- | -0.0259 | 4.93 | 25.08 | 737 | -- | -- |
| 133.43 | 0.54 | 8.76 | 0.138 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 128.54 | 0.53 | 8.75 | -- | 0.305 | -- | -- | -- | -0.367 | 9.17 | -- | -- | -- | -- |
| 87.38 | 0.435 | 8.7 | -- | -- | 1.61 | -- | -- | -0.0807 | -- | 25.2 | 617 | -- | -- |
| 133.93 | 0.54 | 8.76 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 11 | 74.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 19 | 74.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 43 | 74.58 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 49 | 74.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 50 | 74.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 61 | 74.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 77 | 74.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 80 | 74.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 105 | 74.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 106 | 74.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 115 | 74.85 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 118 | 74.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 140 | 74.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 351 | 75.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 430 | 75.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 482 | 75.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 494 | 75.92 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 546 | 76.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 598 | 76.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 603 | 76.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 618 | 76.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 845 | 77.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 949 | 77.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |