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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0701200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 18 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.029) R2 : 5.82e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00315 (0.0611) R2dN8 : 7.52e-06 R2N8 : 5.82e-06
σ : 0.546
deviance : 137.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.83 0.525 3.41 0.0475 0.379 -0.317 -0.851 -0.742 -0.0386 6.12 70.09 4331 -- --
125.24 0.521 3.42 0.0259 0.374 -0.41 -0.82 -- -0.0859 6.25 72 4225 -- --
126.41 0.524 3.4 0.0659 0.418 -0.247 -- -1.03 -0.0217 6.2 70.56 4852 -- --
126.93 0.525 3.42 0.00563 0.376 -0.408 -- -- -0.0892 6.52 72.1 4196 -- --
133.78 0.539 3.41 0.0399 -- -0.336 -- -0.665 -0.0205 -- 69.05 4247 -- --
127.81 0.53 3.4 0.00474 0.385 -- -0.838 -- -0.00762 6.1 -- -- -- --
129.52 0.533 3.4 -0.00299 0.381 -- -- -- -0.00432 6.27 -- -- -- --
134.24 0.54 3.42 0.0169 -- -0.44 -- -- -0.0829 -- 73 4242 -- --
126.93 0.525 3.42 -- 0.376 -0.41 -- -- -0.0902 6.47 72.25 4196 -- --
137.06 0.547 3.41 0.00729 -- -- -- -- 0.00396 -- -- -- -- --
129.52 0.532 3.4 -- 0.381 -- -- -- -0.00399 6.27 -- -- -- --
134.24 0.54 3.43 -- -- -0.432 -- -- -0.087 -- 72.75 4238 -- --
137.06 0.546 3.41 -- -- -- -- -- 0.00315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.62 radiation 10.0 30 > th dose independent rect. 6 2
16 116.37 atmosphere 1005.0 30 > th dose independent rect. 2 6
17 116.58 atmosphere 1000.0 30 > th dose dependent rect. 2 6
18 116.60 humidity 80.0 10 < th dose independent rect. 6 2
22 117.02 temperature 25.0 10 > th dose independent rect. 7 1
27 117.27 temperature 25.0 90 < th dose independent rect. 6 1
42 117.37 humidity 80.0 10 < th dose independent rect. 24 8
49 117.87 humidity 90.0 90 < th dose independent rect. 2 6
55 118.20 temperature 25.0 10 > th dose independent rect. 4 4
57 118.24 temperature 15.0 30 > th dose dependent rect. 2 6
67 118.47 wind 3.0 30 < th dose independent rect. 2 6
77 118.96 radiation 10.0 30 > th dose independent rect. 13 19
85 119.04 wind 5.0 30 < th dose dependent rect. 2 6
86 119.08 wind 3.0 10 < th dose dependent rect. 6 2
89 119.11 atmosphere 1005.0 270 > th dose dependent rect. 2 1
101 119.32 temperature 15.0 30 > th dose independent rect. 8 18
143 119.60 radiation 10.0 10 > th dose dependent rect. 6 1
172 119.69 atmosphere 1000.0 30 > th dose independent rect. 8 18
173 119.70 atmosphere 1005.0 10 > th dose independent rect. 2 2
182 120.04 wind 1.0 30 > th dose independent rect. 2 6
185 120.14 radiation 10.0 30 > th dose independent sin 11 NA
202 120.35 radiation 1.0 30 > th dose independent rect. 8 22
234 120.57 precipitation 0.1 30 < th dose independent rect. 2 6
235 120.57 precipitation 0.1 30 < th dose dependent rect. 2 6
240 120.63 wind 9.0 1440 < th dose independent rect. 3 6
241 120.63 temperature 10.0 1440 > th dose independent rect. 3 6
244 120.63 humidity 50.0 1440 > th dose independent rect. 3 6
246 120.63 atmosphere 995.0 1440 > th dose independent rect. 3 6
247 120.63 temperature 10.0 1440 > th dose independent rect. 9 18
252 120.67 temperature 10.0 30 > th dose independent rect. 2 6
254 120.67 temperature 30.0 30 < th dose independent rect. 2 6
255 120.67 humidity 50.0 30 > th dose independent rect. 2 6
257 120.67 atmosphere 995.0 30 > th dose independent rect. 2 6
258 120.67 atmosphere 1015.0 30 < th dose independent rect. 2 6
261 120.68 wind 9.0 30 < th dose independent rect. 8 18
265 120.72 precipitation 0.1 30 < th dose independent rect. 8 18
266 120.72 precipitation 0.1 30 < th dose dependent rect. 8 18
267 120.73 humidity 50.0 30 > th dose independent rect. 8 18
289 120.86 radiation 40.0 30 < th dose independent rect. 2 6
294 120.89 atmosphere 1005.0 30 > th dose independent rect. 6 2
301 120.95 temperature 30.0 30 < th dose independent rect. 8 18
326 121.27 wind 3.0 30 < th dose independent rect. 6 2
343 121.41 wind 1.0 30 > th dose independent rect. 8 18
347 121.43 humidity 90.0 10 < th dose dependent rect. 6 2
360 121.54 temperature 15.0 30 > th dose independent rect. 8 22
375 121.66 radiation 20.0 10 < th dose independent rect. 2 6
379 121.68 humidity 90.0 10 < th dose dependent rect. 3 5
382 121.69 temperature 20.0 10 > th dose dependent rect. 4 4
395 121.77 atmosphere 1000.0 90 > th dose independent rect. 3 23
396 121.78 atmosphere 1000.0 30 > th dose dependent rect. 6 2
405 121.83 temperature 10.0 30 > th dose dependent rect. 8 18
406 121.84 wind 3.0 30 < th dose independent rect. 2 2
422 121.86 atmosphere 1000.0 30 > th dose independent rect. 8 22
447 121.92 atmosphere 995.0 30 > th dose dependent rect. 8 18
460 121.94 humidity 90.0 90 < th dose independent rect. 2 1
461 121.94 wind 9.0 4320 < th dose independent rect. 7 2
466 121.96 temperature 15.0 10 > th dose independent rect. 4 22
498 122.10 wind 1.0 30 > th dose independent rect. 6 2
503 122.13 temperature 20.0 30 > th dose dependent rect. 6 2
520 122.19 wind 7.0 90 < th dose dependent rect. 2 1
521 122.19 temperature 30.0 90 < th dose dependent rect. 6 1
542 122.25 atmosphere 1000.0 10 > th dose independent rect. 4 22
568 122.32 radiation 40.0 10 < th dose dependent rect. 2 6
570 122.33 temperature 10.0 1440 > th dose independent rect. 7 2
574 122.33 humidity 50.0 1440 > th dose independent rect. 7 2
576 122.33 atmosphere 995.0 1440 > th dose independent rect. 7 2
577 122.33 atmosphere 1015.0 1440 < th dose independent rect. 7 2
579 122.33 radiation 40.0 90 < th dose independent rect. 11 21
580 122.33 temperature 10.0 1440 > th dose independent rect. 9 22
602 122.40 precipitation 0.1 30 < th dose independent rect. 6 2
605 122.40 precipitation 0.1 30 < th dose dependent rect. 6 2
608 122.41 temperature 10.0 30 > th dose independent rect. 6 2
611 122.41 humidity 50.0 30 > th dose independent rect. 6 2
613 122.41 atmosphere 995.0 30 > th dose independent rect. 6 2
614 122.41 atmosphere 1015.0 30 < th dose independent rect. 6 2
623 122.42 wind 9.0 30 < th dose independent rect. 8 22
639 122.48 atmosphere 1015.0 30 < th dose independent rect. 8 18
641 122.50 radiation 40.0 30 < th dose independent rect. 6 2
646 122.52 atmosphere 1000.0 30 > th dose independent rect. 8 5
680 122.57 precipitation 0.1 30 < th dose independent rect. 8 22
685 122.57 precipitation 0.1 30 < th dose dependent rect. 8 22
712 122.61 atmosphere 995.0 90 > th dose dependent rect. 8 3
718 122.63 temperature 15.0 30 > th dose independent rect. 21 5
728 122.64 radiation 10.0 30 < th dose dependent rect. 5 21
732 122.66 temperature 10.0 90 > th dose independent rect. 2 1
734 122.66 temperature 30.0 90 < th dose independent rect. 2 1
735 122.66 humidity 50.0 90 > th dose independent rect. 2 1
738 122.66 atmosphere 995.0 90 > th dose independent rect. 2 1
739 122.66 atmosphere 1010.0 90 < th dose independent rect. 2 1
741 122.66 radiation 1.0 90 < th dose independent rect. 2 1
746 122.66 precipitation 0.1 90 < th dose independent rect. 2 1
756 122.66 precipitation 0.1 270 < th dose independent rect. 9 23
757 122.66 radiation 1.0 90 < th dose dependent rect. 2 1
762 122.66 precipitation 0.1 90 < th dose dependent rect. 2 1
765 122.66 precipitation 0.1 270 < th dose dependent rect. 9 23
800 122.73 temperature 15.0 270 > th dose independent rect. 20 14
814 122.76 humidity 50.0 30 > th dose independent rect. 8 22
827 122.78 wind 1.0 30 > th dose independent rect. 13 19
828 122.78 atmosphere 1015.0 30 < th dose independent rect. 13 19
841 122.81 wind 3.0 90 > th dose independent rect. 22 13
845 122.81 temperature 30.0 30 < th dose independent rect. 8 22
858 122.84 radiation 20.0 10 < th dose independent rect. 6 2
860 122.84 atmosphere 1000.0 90 > th dose independent rect. 8 3
869 122.85 wind 9.0 10 < th dose dependent rect. 13 19
873 122.86 atmosphere 995.0 30 > th dose dependent rect. 13 19
877 122.87 atmosphere 1015.0 90 < th dose independent rect. 11 21
879 122.87 wind 3.0 30 < th dose dependent rect. 2 11
891 122.88 wind 9.0 30 < th dose dependent rect. 19 13
892 122.88 wind 9.0 30 < th dose dependent rect. 8 18
893 122.89 wind 1.0 270 > th dose independent rect. 8 1
895 122.89 wind 9.0 30 < th dose independent rect. 8 5
904 122.90 precipitation 0.1 30 < th dose independent rect. 13 19
909 122.90 precipitation 0.1 30 < th dose dependent rect. 13 19
913 122.91 temperature 10.0 90 > th dose dependent rect. 2 1
925 122.93 atmosphere 1000.0 270 > th dose independent rect. 8 1
935 122.95 temperature 10.0 1440 > th dose independent rect. 9 5
938 122.95 atmosphere 995.0 1440 > th dose independent rect. 9 5
941 122.95 wind 9.0 30 < th dose independent rect. 13 19
942 122.95 temperature 10.0 1440 > th dose independent rect. 14 19
946 122.95 temperature 10.0 90 > th dose dependent rect. 8 3
947 122.96 wind 1.0 90 > th dose independent rect. 8 3
950 122.96 precipitation 0.1 90 < th dose independent rect. 11 21
953 122.96 precipitation 0.1 90 < th dose dependent rect. 11 21
961 122.98 radiation 10.0 270 > th dose independent rect. 8 1
962 122.98 humidity 50.0 90 > th dose independent rect. 8 3
967 122.99 radiation 1.0 90 > th dose independent rect. 8 11
979 123.00 radiation 1.0 90 > th dose independent rect. 8 3
981 123.00 precipitation 0.1 90 < th dose independent rect. 3 23
995 123.00 precipitation 0.1 90 < th dose dependent rect. 3 23
996 123.01 precipitation 0.1 10 < th dose independent rect. 2 2
997 123.01 temperature 10.0 30 > th dose independent rect. 8 5
1000 123.01 atmosphere 1015.0 30 < th dose independent rect. 8 5