Os11g0701000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Class III chitinase homologue (OsChib3H-c).
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Os11g0701000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Class III chitinase homologue (OsChib3H-c).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.93 | 0.325 | 3.1 | 0.00707 | 0.0761 | -2.44 | 0.302 | -12.3 | -0.069 | 11.2 | 10.5 | 692 | -- | -- |
| 54.05 | 0.342 | 3.05 | -0.131 | 0.0192 | -0.404 | -0.0149 | -- | -0.0352 | 22.9 | 10.5 | 388 | -- | -- |
| 48.29 | 0.324 | 3.1 | 0.0183 | 0.0778 | -2.4 | -- | -11.9 | -0.0676 | 10.2 | 10.54 | 707 | -- | -- |
| 53.67 | 0.341 | 3.06 | -0.114 | 0.0687 | -0.208 | -- | -- | -0.0534 | 10.7 | 10.2 | 377 | -- | -- |
| 48.65 | 0.325 | 3.1 | 0.0166 | -- | -2.37 | -- | -11.9 | -0.0692 | -- | 10.5 | 706 | -- | -- |
| 53.73 | 0.344 | 3.06 | -0.148 | 0.0631 | -- | 0.16 | -- | -0.0659 | 10.5 | -- | -- | -- | -- |
| 53.81 | 0.344 | 3.06 | -0.142 | 0.0667 | -- | -- | -- | -0.0659 | 9.3 | -- | -- | -- | -- |
| 53.76 | 0.341 | 3.06 | -0.126 | -- | -0.298 | -- | -- | -0.0543 | -- | 10.4 | 373 | -- | -- |
| 53.88 | 0.342 | 3.06 | -- | 0.0823 | -0.359 | -- | -- | -0.0588 | 9.74 | 10.38 | 377 | -- | -- |
| 54.07 | 0.344 | 3.06 | -0.143 | -- | -- | -- | -- | -0.0657 | -- | -- | -- | -- | -- |
| 54.34 | 0.345 | 3.06 | -- | 0.0668 | -- | -- | -- | -0.0501 | 9.46 | -- | -- | -- | -- |
| 54.17 | 0.343 | 3.06 | -- | -- | -0.36 | -- | -- | -0.0435 | -- | 10.39 | 377 | -- | -- |
| 54.61 | 0.345 | 3.06 | -- | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.18 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 46.10 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 4 | 47.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 5 | 47.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 10 | 47.39 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 12 | 47.46 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 15 | 47.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 16 | 47.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 17 | 47.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 18 | 47.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 23 | 47.66 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 27 | 47.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 29 | 47.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 39 | 47.69 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 68 | 47.99 | wind | 9.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 85 | 48.04 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 86 | 48.04 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 107 | 48.11 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 23 | 2 |
| 108 | 48.12 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 21 | 2 |
| 109 | 48.12 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 3 |
| 120 | 48.13 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 125 | 48.14 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 20 | 2 |
| 130 | 48.15 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 3 |
| 146 | 48.16 | wind | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 148 | 48.16 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 152 | 48.16 | wind | 1.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 178 | 48.18 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 196 | 48.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 17 | 9 |
| 211 | 48.21 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 9 |
| 219 | 48.21 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 251 | 48.23 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 277 | 48.24 | wind | 9.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 349 | 48.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 354 | 48.41 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 418 | 48.53 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 458 | 48.58 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 470 | 48.59 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 496 | 48.65 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 8 |
| 513 | 48.66 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 543 | 48.72 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 557 | 48.72 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 577 | 48.77 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 12 | NA |
| 595 | 48.78 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 621 | 48.80 | atmosphere | 1000.0 | 10 | < th | dose independent | sin | 11 | NA |
| 634 | 48.81 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 718 | 48.96 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 721 | 48.97 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 752 | 49.04 | wind | 9.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 768 | 49.07 | wind | 1.0 | 90 | < th | dose independent | rect. | 16 | 10 |
| 803 | 49.13 | wind | 7.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 863 | 49.25 | wind | 7.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 882 | 49.29 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 925 | 49.34 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 984 | 49.42 | atmosphere | 1000.0 | 10 | < th | dose dependent | sin | 11 | NA |