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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0700400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0352) R2 : 0.000128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0179 (0.0742) R2dN8 : 0.000166 R2N8 : 0.000128
σ : 0.663
deviance : 201.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.65 0.656 3.07 0.0401 0.156 0.398 0.0418 0.665 0.0438 8.71 83.81 1473 -- --
195.28 0.651 3.08 -0.0195 0.157 0.455 0.0634 -- 0.0299 8.77 84 1447 -- --
194.66 0.65 3.07 0.0417 0.156 0.399 -- 0.663 0.0435 8.71 84 1473 -- --
195.29 0.651 3.08 -0.0208 0.154 0.453 -- -- 0.0314 8.73 83.76 1448 -- --
196.03 0.652 3.07 0.0446 -- 0.401 -- 0.648 0.0432 -- 84.69 1482 -- --
200.5 0.664 3.08 0.0413 0.159 -- 0.0357 -- 0.0211 8.36 -- -- -- --
200.5 0.663 3.08 0.0424 0.159 -- -- -- 0.0211 8.38 -- -- -- --
196.63 0.653 3.08 -0.0205 -- 0.457 -- -- 0.0344 -- 84.26 1452 -- --
195.3 0.651 3.08 -- 0.154 0.451 -- -- 0.0343 8.72 84.01 1451 -- --
201.91 0.664 3.08 0.0433 -- -- -- -- 0.0227 -- -- -- -- --
200.55 0.662 3.08 -- 0.159 -- -- -- 0.0164 8.36 -- -- -- --
196.64 0.653 3.08 -- -- 0.455 -- -- 0.0345 -- 84.77 1452 -- --
201.96 0.663 3.09 -- -- -- -- -- 0.0179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.30 atmosphere 1000 10 < th dose independent rect. 15 8
7 191.40 atmosphere 1000 30 < th dose dependent rect. 15 7
9 191.43 atmosphere 1000 30 < th dose dependent rect. 15 3
21 191.55 atmosphere 1000 90 < th dose dependent rect. 14 1
41 191.65 atmosphere 1000 10 < th dose independent rect. 15 1
80 192.01 humidity 80 4320 < th dose dependent rect. 15 1
86 192.08 humidity 70 4320 > th dose independent rect. 15 2
91 192.29 wind 3 30 < th dose dependent rect. 8 1
92 192.31 humidity 70 1440 > th dose dependent rect. 17 2
98 192.45 humidity 70 4320 < th dose independent rect. 15 2
99 192.45 humidity 50 4320 > th dose dependent rect. 15 1
102 192.52 humidity 80 1440 < th dose independent rect. 17 2
103 192.56 humidity 80 4320 > th dose independent rect. 18 1
123 192.81 humidity 90 4320 < th dose dependent rect. 14 5
130 192.88 humidity 50 4320 > th dose dependent rect. 14 5
180 193.16 humidity 90 1440 < th dose dependent rect. 12 10
190 193.18 humidity 90 1440 < th dose dependent rect. 12 15
208 193.21 atmosphere 1000 90 < th dose dependent rect. 14 18
269 193.35 humidity 50 1440 > th dose dependent rect. 12 14
319 193.45 temperature 20 30 > th dose independent rect. 4 2
359 193.51 humidity 90 1440 < th dose dependent sin 17 NA
429 193.59 humidity 50 1440 > th dose dependent sin 17 NA
499 193.67 humidity 70 4320 > th dose independent rect. 13 14
604 193.75 humidity 80 1440 < th dose dependent rect. 12 1
939 194.01 humidity 70 4320 > th dose independent sin 16 NA
970 194.03 humidity 90 1440 < th dose independent rect. 9 13
989 194.04 atmosphere 1000 90 > th dose independent rect. 5 23