Os11g0697100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0697100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.67 | 0.507 | 6.01 | -0.717 | 0.411 | 1.04 | -0.0455 | -1.82 | -0.0847 | 11.7 | 1.669 | 1450 | -- | -- |
| 119.5 | 0.509 | 6.01 | -0.587 | 0.574 | 1.24 | -0.0507 | -- | -0.0829 | 11.5 | 0.71 | 1393 | -- | -- |
| 116.68 | 0.503 | 6.01 | -0.719 | 0.411 | 1.04 | -- | -1.82 | -0.0845 | 11.7 | 1.665 | 1450 | -- | -- |
| 119.27 | 0.509 | 6 | -0.589 | 0.666 | 1.32 | -- | -- | -0.0764 | 11.4 | 0.68 | 1379 | -- | -- |
| 120.2 | 0.511 | 6.03 | -0.694 | -- | 1.33 | -- | -1.86 | -0.127 | -- | 1.87 | 1546 | -- | -- |
| 138.08 | 0.551 | 5.95 | -0.283 | 0.457 | -- | -0.287 | -- | 0.136 | 11.5 | -- | -- | -- | -- |
| 138.43 | 0.551 | 5.95 | -0.294 | 0.458 | -- | -- | -- | 0.135 | 11.6 | -- | -- | -- | -- |
| 123.15 | 0.517 | 5.98 | -0.53 | -- | 1.39 | -- | -- | -0.0135 | -- | 1.17 | 1554 | -- | -- |
| 126.52 | 0.524 | 6 | -- | 0.314 | 1.06 | -- | -- | -0.0136 | 11.3 | 1.61 | 1494 | -- | -- |
| 151.6 | 0.575 | 5.96 | -0.307 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 140.71 | 0.555 | 5.94 | -- | 0.461 | -- | -- | -- | 0.168 | 11.6 | -- | -- | -- | -- |
| 129.08 | 0.529 | 5.98 | -- | -- | 1.28 | -- | -- | 0.0257 | -- | 1.619 | 1570 | -- | -- |
| 154.09 | 0.579 | 5.95 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 5 | 115.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 8 | 115.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 24 | 116.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 20 |
| 47 | 117.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 56 | 117.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 67 | 117.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 72 | 117.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 73 | 117.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 90 | 117.40 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 91 | 117.42 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 130 | 117.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 144 | 117.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 165 | 117.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 168 | 117.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 178 | 118.02 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 179 | 118.03 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 184 | 118.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 185 | 118.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 186 | 118.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 191 | 118.06 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 221 | 118.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 233 | 118.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 312 | 118.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 338 | 118.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 360 | 118.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 376 | 118.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 387 | 118.58 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 390 | 118.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 395 | 118.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 399 | 118.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 414 | 118.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 415 | 118.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 433 | 118.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 434 | 118.67 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 450 | 118.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 465 | 118.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 470 | 118.75 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 510 | 118.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 524 | 118.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 548 | 118.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 551 | 118.77 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 571 | 118.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 583 | 118.78 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 604 | 118.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 616 | 118.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 626 | 118.88 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 732 | 119.07 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 740 | 119.09 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 763 | 119.14 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 766 | 119.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 836 | 119.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 904 | 119.34 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 963 | 119.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 976 | 119.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |