Os11g0696900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os11g0696900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.77 | 0.434 | -806 | 4950 | 0.192 | -203000 | -0.397 | 1240000 | -0.0502 | 5.19 | 995 | 90 | -- | -- |
| 102.52 | 0.475 | 3.34 | 0.113 | 0.152 | 2.15 | -0.543 | -- | -0.0582 | 4.79 | 995 | 90 | -- | -- |
| 87.05 | 0.435 | -806 | 4950 | 0.195 | -203000 | -- | 1240000 | -0.0486 | 6 | 995 | 90 | -- | -- |
| 79.23 | 0.415 | 3.34 | 0.0814 | 0.116 | 4.92 | -- | -- | -0.0501 | 9.13 | 994.8 | 134 | -- | -- |
| 89.03 | 0.439 | -806 | 4950 | -- | -203000 | -- | 1240000 | -0.0435 | -- | 995 | 90 | -- | -- |
| 107.57 | 0.486 | 3.34 | 0.127 | 0.121 | -- | -0.638 | -- | -0.0644 | 4.56 | -- | -- | -- | -- |
| 108.45 | 0.488 | 3.34 | 0.132 | 0.134 | -- | -- | -- | -0.0609 | 6.28 | -- | -- | -- | -- |
| 79.79 | 0.416 | 3.34 | 0.104 | -- | 5.42 | -- | -- | -0.0447 | -- | 994.7 | 139 | -- | -- |
| 78.08 | 0.412 | 3.33 | -- | 0.198 | 5.54 | -- | -- | -0.0589 | 6.16 | 994.8 | 142 | -- | -- |
| 109.38 | 0.489 | 3.34 | 0.136 | -- | -- | -- | -- | -0.058 | -- | -- | -- | -- | -- |
| 108.91 | 0.488 | 3.34 | -- | 0.136 | -- | -- | -- | -0.0756 | 6.23 | -- | -- | -- | -- |
| 80.08 | 0.417 | 3.34 | -- | -- | 5.44 | -- | -- | -0.0563 | -- | 994.7 | 139 | -- | -- |
| 109.87 | 0.489 | 3.34 | -- | -- | -- | -- | -- | -0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.00 | atmosphere | 995 | 10 | > th | dose independent | sin | 9 | NA |
| 8 | 77.57 | atmosphere | 995 | 10 | < th | dose independent | sin | 9 | NA |
| 9 | 77.58 | atmosphere | 995 | 30 | < th | dose dependent | sin | 9 | NA |
| 10 | 77.59 | atmosphere | 995 | 10 | < th | dose independent | rect. | 16 | 2 |
| 34 | 77.62 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 35 | 77.65 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 16 | 3 |
| 60 | 77.72 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 105 | 77.79 | atmosphere | 995 | 90 | < th | dose independent | rect. | 16 | 1 |
| 389 | 78.11 | temperature | 30 | 10 | > th | dose independent | rect. | 16 | 2 |
| 390 | 78.14 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 406 | 78.18 | temperature | 30 | 30 | > th | dose independent | rect. | 18 | 1 |
| 495 | 79.44 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 498 | 79.51 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 539 | 80.38 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 562 | 81.43 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 703 | 84.95 | temperature | 30 | 10 | > th | dose independent | sin | 11 | NA |
| 784 | 86.77 | atmosphere | 995 | 90 | < th | dose dependent | no | NA | NA |
| 996 | 86.94 | atmosphere | 995 | 270 | > th | dose independent | sin | 4 | NA |
| 998 | 86.95 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 1 |