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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0695700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0543) R2 : 0.0773
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.57 (0.452) R2dE : 0.0647 R2E : 0.065
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.239 (0.114) R2dN8 : 0.0123 R2N8 : 0.0126
σ : 1.02
deviance : 478.82
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998
memory length : 29
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.87
open length of G : 6.91

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.02 1.02 3.95 -3.24 0.256 55.4 -0.115 -312 -0.23 16.8 998 19 4.13 6.09
476.2 1.02 3.37 0.148 0.257 2.6 -0.107 -- -0.23 16.8 998 19 4.13 6.09
467.05 1.01 3.95 -3.24 0.256 55.4 -- -312 -0.23 16.9 998 20 4.18 6.03
476.23 1.02 3.37 0.148 0.257 2.6 -- -- -0.23 16.9 998 19 4.13 6.09
470.48 1.02 3.94 -3.25 -- 55.4 -- -313 -0.238 -- 998 20 4.18 6.03
508.67 1.06 3.38 0.222 0.196 -- -0.309 -- -0.259 15.7 -- -- -- --
508.95 1.06 3.38 0.217 0.194 -- -- -- -0.26 15.5 -- -- -- --
479.68 1.02 3.37 0.14 -- 2.53 -- -- -0.238 -- 998 19 4.13 6.09
474.96 1.02 3.37 -- 0.264 2.64 -- -- -0.235 16.9 998 26 3.85 6.77
511.06 1.06 3.38 0.209 -- -- -- -- -0.266 -- -- -- -- --
510.2 1.06 3.38 -- 0.19 -- -- -- -0.285 15.5 -- -- -- --
478.82 1.02 3.37 -- -- 2.57 -- -- -0.239 -- 998 29 3.87 6.91
512.21 1.06 3.38 -- -- -- -- -- -0.289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 480.01 atmosphere 1000 90 < th dose dependent rect. 3 7
2 481.12 atmosphere 1000 270 < th dose dependent rect. 1 6
7 481.67 atmosphere 1000 10 < th dose dependent rect. 4 6
8 481.72 atmosphere 1000 10 < th dose dependent rect. 2 8
21 482.18 atmosphere 1000 10 < th dose independent rect. 4 6
25 482.31 atmosphere 1000 270 < th dose independent rect. 1 6
30 482.49 atmosphere 1000 90 < th dose independent rect. 3 7
61 483.90 wind 9 90 > th dose independent rect. 13 2
65 484.03 atmosphere 1000 10 < th dose independent rect. 2 9
68 484.14 atmosphere 1000 270 < th dose independent rect. 5 1
69 484.14 atmosphere 1000 90 < th dose independent rect. 4 3
71 484.15 atmosphere 1000 10 < th dose dependent rect. 4 2
76 484.30 atmosphere 1000 10 < th dose independent rect. 4 2
106 484.62 wind 9 90 > th dose dependent rect. 13 2
215 487.33 wind 3 30 > th dose independent rect. 14 23
259 488.42 wind 9 10 > th dose independent rect. 13 1
271 488.42 wind 9 10 > th dose dependent rect. 13 1
307 488.68 temperature 30 90 > th dose dependent rect. 10 1
316 488.81 atmosphere 1000 720 < th dose independent rect. 23 3
406 489.97 atmosphere 1000 270 > th dose independent rect. 23 11
408 489.98 temperature 30 90 > th dose independent rect. 18 15
429 490.19 temperature 30 90 > th dose independent rect. 10 1
488 490.89 temperature 30 90 > th dose dependent rect. 18 16
506 491.04 temperature 25 270 > th dose dependent rect. 3 2
528 491.30 atmosphere 1000 270 < th dose independent sin 8 NA
540 491.40 atmosphere 1000 720 > th dose independent rect. 1 1
572 491.64 atmosphere 1000 90 < th dose independent sin 6 NA
586 491.78 wind 3 30 < th dose independent rect. 5 21
587 491.78 atmosphere 1005 720 < th dose dependent rect. 21 6
594 491.81 atmosphere 1010 720 < th dose dependent rect. 21 4
597 491.83 atmosphere 1010 720 < th dose dependent rect. 23 1
609 491.90 atmosphere 1000 270 > th dose independent sin 8 NA
614 491.92 temperature 30 90 > th dose dependent rect. 8 1
644 492.03 wind 1 270 < th dose dependent rect. 5 5
656 492.09 atmosphere 1000 10 > th dose independent rect. 2 11
667 492.20 atmosphere 1005 30 > th dose dependent rect. 13 1
669 492.21 atmosphere 1000 270 < th dose dependent sin 8 NA
670 492.21 wind 5 270 > th dose dependent rect. 12 2
671 492.21 wind 1 270 < th dose dependent rect. 5 2
679 492.25 temperature 30 90 > th dose independent rect. 8 1
713 492.41 wind 3 30 > th dose independent rect. 21 23
715 492.41 atmosphere 995 270 > th dose dependent rect. 23 10
717 492.42 wind 1 270 < th dose independent rect. 5 5
758 492.59 atmosphere 995 10 > th dose dependent rect. 2 11
784 492.71 atmosphere 1000 720 > th dose independent rect. 23 4
788 492.73 wind 1 270 < th dose independent rect. 5 3
792 492.75 temperature 25 270 > th dose independent rect. 3 1
793 492.75 atmosphere 995 30 > th dose dependent rect. 24 13
794 492.76 wind 3 10 < th dose independent rect. 22 13
809 492.77 wind 1 270 < th dose independent rect. 3 7
818 492.82 wind 3 10 < th dose independent rect. 20 15
841 492.93 atmosphere 995 720 > th dose dependent rect. 1 1
843 492.94 wind 3 30 > th dose independent rect. 21 16
858 493.02 atmosphere 1000 10 > th dose independent sin 6 NA
861 493.03 atmosphere 1005 30 > th dose independent rect. 24 13
908 493.15 atmosphere 1000 720 > th dose independent rect. 21 7