Os11g0695000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bacterial blight resistance protein.
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Os11g0695000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bacterial blight resistance protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.48 | 0.576 | 10.4 | 0.407 | 2.33 | -3.08 | -1.13 | 0.478 | 0.125 | 14.7 | 2.072 | 790 | 12.9 | 5.8 |
| 148.65 | 0.568 | 10.4 | 0.48 | 2.38 | -3.13 | -1.36 | -- | 0.0989 | 14.6 | 2.416 | 825 | 12.8 | 5.75 |
| 145.48 | 0.562 | 10.4 | 0.358 | 2.11 | -2.62 | -- | 2.79 | 0.162 | 14.9 | 5.039 | 834 | 13.9 | 4.72 |
| 154.23 | 0.578 | 10.4 | 0.41 | 2.4 | -3.14 | -- | -- | 0.0905 | 14.6 | 2.147 | 825 | 12.8 | 5.76 |
| 175.15 | 0.616 | 10.3 | 0.45 | -- | -4.07 | -- | 1.67 | 0.219 | -- | 3.937 | 794 | 14.4 | 6.89 |
| 230.36 | 0.712 | 10.3 | 0.78 | 3.03 | -- | -1.66 | -- | 0.325 | 14 | -- | -- | -- | -- |
| 240.78 | 0.727 | 10.3 | 0.731 | 3.03 | -- | -- | -- | 0.316 | 14.1 | -- | -- | -- | -- |
| 184.92 | 0.633 | 10.4 | 0.566 | -- | -3.96 | -- | -- | 0.214 | -- | 3.671 | 777 | 14.3 | 7.2 |
| 157.4 | 0.584 | 10.4 | -- | 2.44 | -3.23 | -- | -- | 0.0813 | 14.6 | 1.837 | 825 | 12.8 | 5.72 |
| 789.91 | 1.31 | 10.4 | 0.605 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 254.86 | 0.747 | 10.3 | -- | 3.01 | -- | -- | -- | 0.234 | 14.1 | -- | -- | -- | -- |
| 185.9 | 0.635 | 10.4 | -- | -- | -4.78 | -- | -- | 0.235 | -- | 1.652 | 777 | 13 | 8.46 |
| 799.56 | 1.32 | 10.4 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.11 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 3 | 158.21 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 6 | 159.74 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 8 | 159.90 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 9 |
| 11 | 160.05 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 18 | 160.82 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 28 | 161.14 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 35 | 161.58 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 39 | 161.68 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 52 | 163.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 61 | 163.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 69 | 163.87 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 75 | 164.21 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 136 | 166.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 139 | 166.35 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 156 | 167.06 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 227 | 169.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 271 | 170.51 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 395 | 172.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 396 | 172.34 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 431 | 172.88 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 467 | 173.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 480 | 173.40 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 493 | 173.46 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 503 | 173.52 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 538 | 173.79 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 549 | 173.88 | humidity | 50 | 720 | > th | dose dependent | sin | 19 | NA |
| 722 | 174.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 764 | 175.28 | humidity | 70 | 720 | > th | dose independent | sin | 18 | NA |
| 814 | 175.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 823 | 175.58 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 860 | 175.83 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 888 | 175.97 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 893 | 176.01 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 19 |