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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0694100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0343) R2 : 0.00477
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.107 (0.0722) R2dN8 : 0.00616 R2N8 : 0.00477
σ : 0.646
deviance : 191.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.92 0.614 2.84 0.234 0.231 0.323 0.488 1.52 -0.0226 5.36 48.01 3657 -- --
171.87 0.611 2.87 0.144 0.226 0.875 0.506 -- 0.00414 5.17 48.66 3657 -- --
171.41 0.61 2.84 0.227 0.238 0.346 -- 1.46 -0.0228 6.01 48 3657 -- --
172.24 0.611 2.87 0.187 0.255 0.919 -- -- -0.00455 5.91 47.46 3649 -- --
174.36 0.615 2.85 0.24 -- 0.334 -- 1.42 -0.0237 -- 48.16 3659 -- --
183.54 0.635 2.89 0.427 0.194 -- 0.515 -- -0.0614 4.22 -- -- -- --
184 0.635 2.89 0.423 0.214 -- -- -- -0.0642 5.47 -- -- -- --
175.02 0.616 2.88 0.148 -- 0.854 -- -- -0.00269 -- 48.43 3661 -- --
172.63 0.612 2.87 -- 0.238 0.942 -- -- -0.00476 6.33 48 3661 -- --
186.39 0.638 2.89 0.43 -- -- -- -- -0.059 -- -- -- -- --
188.7 0.643 2.9 -- 0.221 -- -- -- -0.111 5.39 -- -- -- --
175.51 0.617 2.88 -- -- 0.924 -- -- -0.0105 -- 49 3661 -- --
191.26 0.646 2.9 -- -- -- -- -- -0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.82 wind 1.0 90 < th dose independent rect. 6 1
2 164.50 wind 1.0 10 < th dose independent rect. 8 1
4 164.50 wind 1.0 10 < th dose dependent rect. 8 1
6 164.51 atmosphere 1005.0 30 > th dose dependent rect. 6 2
9 164.71 precipitation 0.1 10 > th dose independent rect. 7 13
13 164.71 precipitation 0.1 10 > th dose dependent rect. 7 13
17 164.72 precipitation 0.1 10 > th dose independent rect. 17 3
37 164.72 precipitation 0.1 10 > th dose dependent rect. 17 3
58 165.04 wind 3.0 90 < th dose dependent rect. 6 1
63 165.99 precipitation 0.1 10 > th dose independent rect. 19 1
73 165.99 precipitation 0.1 10 > th dose dependent rect. 19 1
83 166.06 temperature 30.0 90 < th dose dependent rect. 6 1
90 167.20 humidity 80.0 90 > th dose dependent rect. 6 1
91 167.22 atmosphere 1000.0 30 > th dose independent rect. 6 2
106 167.84 radiation 10.0 720 < th dose independent rect. 12 1
111 167.98 radiation 1.0 270 < th dose independent rect. 15 1
117 168.22 radiation 20.0 90 < th dose independent rect. 6 2
120 168.42 radiation 1.0 90 > th dose independent rect. 6 1
128 168.67 humidity 70.0 10 > th dose independent rect. 6 2
130 168.73 radiation 30.0 10 < th dose independent rect. 6 2
131 168.75 temperature 25.0 90 < th dose independent rect. 6 1
132 168.76 radiation 10.0 720 < th dose independent rect. 11 4
133 168.76 wind 7.0 30 > th dose dependent rect. 19 1
144 168.90 wind 1.0 10 > th dose independent rect. 6 2
175 169.21 radiation 40.0 30 < th dose dependent rect. 6 2
196 169.49 radiation 1.0 10 > th dose independent rect. 6 2
201 169.54 precipitation 0.1 10 < th dose independent rect. 8 22
202 169.54 precipitation 0.1 10 < th dose dependent rect. 8 22
208 169.59 precipitation 0.1 90 < th dose independent rect. 6 1
209 169.59 precipitation 0.1 90 < th dose dependent rect. 6 1
211 169.60 radiation 10.0 720 < th dose dependent rect. 12 2
215 169.63 temperature 10.0 90 > th dose independent rect. 6 1
218 169.63 humidity 50.0 90 > th dose independent rect. 6 1
221 169.63 atmosphere 1015.0 90 < th dose independent rect. 6 1
223 169.63 temperature 10.0 90 > th dose independent rect. 7 23
240 169.79 precipitation 0.1 10 < th dose independent rect. 6 2
242 169.79 precipitation 0.1 10 < th dose dependent rect. 6 2
266 169.84 wind 9.0 90 < th dose independent rect. 7 23
283 169.95 temperature 10.0 10 > th dose independent rect. 6 2
287 169.95 temperature 30.0 10 < th dose independent rect. 6 2
289 169.95 humidity 50.0 10 > th dose independent rect. 6 2
295 169.95 atmosphere 995.0 4320 > th dose independent rect. 7 2
296 169.95 atmosphere 1015.0 10 < th dose independent rect. 6 2
298 169.95 temperature 10.0 10 > th dose independent rect. 8 22
302 169.99 atmosphere 1005.0 30 > th dose dependent rect. 3 5
304 170.00 wind 9.0 1440 < th dose independent rect. 7 2
305 170.00 temperature 10.0 1440 > th dose independent rect. 7 2
309 170.00 humidity 50.0 1440 > th dose independent rect. 7 2
312 170.00 atmosphere 1015.0 1440 < th dose independent rect. 7 2
313 170.00 temperature 10.0 1440 > th dose independent rect. 9 22
331 170.23 humidity 90.0 10 < th dose independent rect. 6 2
459 171.37 atmosphere 1015.0 4320 > th dose dependent rect. 8 1
466 171.43 atmosphere 1015.0 4320 < th dose independent rect. 9 1
469 171.44 atmosphere 1015.0 4320 > th dose independent rect. 8 1
547 171.86 wind 5.0 10 < th dose independent rect. 18 12
556 171.94 precipitation 0.1 10 > th dose independent sin 21 NA
558 171.99 precipitation 0.1 10 > th dose dependent sin 21 NA
575 172.06 humidity 70.0 4320 < th dose independent rect. 8 2
579 172.13 atmosphere 1015.0 4320 > th dose independent rect. 14 3
594 172.23 temperature 10.0 10 > th dose dependent rect. 6 2
605 172.27 atmosphere 1015.0 4320 > th dose dependent rect. 13 5
609 172.29 humidity 90.0 90 > th dose independent rect. 6 14
617 172.33 humidity 60.0 4320 > th dose independent rect. 10 1
624 172.36 humidity 70.0 4320 > th dose independent rect. 8 2
625 172.36 humidity 90.0 30 < th dose independent rect. 8 22
626 172.36 atmosphere 995.0 30 > th dose independent rect. 8 22
629 172.38 atmosphere 1015.0 4320 < th dose independent rect. 14 2
639 172.40 radiation 10.0 720 > th dose independent rect. 11 2
640 172.40 atmosphere 1015.0 4320 > th dose independent rect. 13 7
642 172.41 atmosphere 1015.0 4320 < th dose independent rect. 14 5
696 172.51 atmosphere 1015.0 4320 < th dose independent rect. 12 1
698 172.51 atmosphere 1015.0 4320 < th dose independent rect. 18 2
712 172.53 radiation 10.0 720 > th dose independent rect. 9 6
792 172.71 humidity 70.0 4320 < th dose dependent rect. 9 1
797 172.73 precipitation 0.1 10 < th dose independent sin 20 NA
800 172.73 precipitation 0.1 10 < th dose dependent sin 20 NA
802 172.74 wind 5.0 10 < th dose independent rect. 20 10
805 172.75 humidity 60.0 4320 < th dose independent rect. 10 1
841 172.86 humidity 70.0 4320 > th dose independent rect. 5 5
843 172.86 humidity 70.0 4320 > th dose independent rect. 3 7
846 172.86 humidity 70.0 4320 > th dose independent rect. 22 12
873 172.97 wind 7.0 30 > th dose independent rect. 19 1
877 172.99 radiation 1.0 90 > th dose independent rect. 8 22
890 173.05 humidity 80.0 90 > th dose dependent rect. 6 14
974 173.29 radiation 10.0 720 < th dose independent rect. 10 14
996 173.36 wind 9.0 10 < th dose dependent rect. 8 22