Os11g0694000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0694000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 332.37 | 0.857 | 4.63 | 6.79 | 1.38 | -3.08 | 1.51 | -12.1 | 1.88 | 19.7 | 0.6951 | 4325 | -- | -- |
| 393.51 | 0.924 | 4.9 | 4.98 | 1.14 | -1.86 | 0.501 | -- | 1.36 | 19.4 | 13.84 | 2776 | -- | -- |
| 335.63 | 0.853 | 4.65 | 6.68 | 1.35 | -3.27 | -- | -12.3 | 1.83 | 19.3 | 0.5424 | 4294 | -- | -- |
| 394.06 | 0.925 | 4.94 | 4.88 | 1.22 | -1.74 | -- | -- | 1.39 | 19.1 | 13.59 | 2784 | -- | -- |
| 353.41 | 0.876 | 4.68 | 6.65 | -- | -3.72 | -- | -13.5 | 1.68 | -- | 0.8247 | 9595 | -- | -- |
| 450.36 | 0.995 | 4.87 | 4.91 | 1.34 | -- | 1.51 | -- | 1.71 | 19.9 | -- | -- | -- | -- |
| 456.9 | 1 | 4.87 | 4.87 | 1.35 | -- | -- | -- | 1.72 | 19.8 | -- | -- | -- | -- |
| 415.73 | 0.95 | 4.9 | 4.62 | -- | -2.04 | -- | -- | 1.42 | -- | 36.31 | 973 | -- | -- |
| 1011.6 | 1.48 | 5.04 | -- | 1.12 | -1.65 | -- | -- | 0.889 | 19.4 | 25.67 | 2724 | -- | -- |
| 555.03 | 1.1 | 4.84 | 4.86 | -- | -- | -- | -- | 1.7 | -- | -- | -- | -- | -- |
| 1082.66 | 1.54 | 4.99 | -- | 1.31 | -- | -- | -- | 1.17 | 20.1 | -- | -- | -- | -- |
| 970.7 | 1.45 | 5.04 | -- | -- | -2.47 | -- | -- | 0.795 | -- | 55.21 | 1065 | -- | -- |
| 1177.15 | 1.6 | 4.96 | -- | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 316.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 3 | 316.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 8 | 319.63 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 320.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 23 | 321.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 45 | 324.98 | radiation | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 69 | 326.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 70 | 326.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 73 | 326.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 75 | 326.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 76 | 326.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 85 | 326.35 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 161 | 327.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 231 | 327.90 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 246 | 328.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 253 | 328.21 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 312 | 329.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 333 | 329.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 347 | 330.46 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 359 | 330.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 363 | 330.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 380 | 331.04 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 404 | 331.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 405 | 331.39 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 420 | 331.58 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 539 | 332.89 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 540 | 332.90 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 577 | 333.17 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 11 | NA |
| 580 | 333.20 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 658 | 333.79 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 665 | 333.85 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 737 | 334.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 848 | 334.95 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 895 | 335.13 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 923 | 335.30 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 929 | 335.32 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 971 | 335.41 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 23 |