Os11g0692500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bacterial blight resistance protein.
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Os11g0692500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bacterial blight resistance protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.03 | 0.605 | 8.71 | 0.21 | 2.35 | 1.78 | -1 | -2.57 | -0.0978 | 13.8 | 2.13 | 1473 | -- | -- |
| 174.47 | 0.615 | 8.71 | 0.552 | 2.36 | 1.78 | -1.24 | -- | -0.0424 | 13.8 | 2.13 | 1477 | -- | -- |
| 168.1 | 0.604 | 8.71 | 0.145 | 2.19 | 1.95 | -- | -2.95 | -0.106 | 13.9 | 2.149 | 1508 | -- | -- |
| 180.4 | 0.626 | 8.71 | 0.51 | 2.36 | 1.82 | -- | -- | -0.0491 | 13.9 | 2.133 | 1477 | -- | -- |
| 209.81 | 0.675 | 8.68 | 0.66 | -- | 2.11 | -- | -1.96 | 0.214 | -- | 1.766 | 246 | -- | -- |
| 224.82 | 0.703 | 8.6 | 0.816 | 2.48 | -- | -1.52 | -- | 0.306 | 13.6 | -- | -- | -- | -- |
| 233.95 | 0.716 | 8.61 | 0.767 | 2.48 | -- | -- | -- | 0.297 | 13.7 | -- | -- | -- | -- |
| 222.1 | 0.694 | 8.65 | 0.66 | -- | 2.07 | -- | -- | 0.219 | -- | 1.59 | 256 | -- | -- |
| 186.42 | 0.636 | 8.7 | -- | 2.35 | 2.01 | -- | -- | -0.0851 | 13.9 | 1.92 | 1473 | -- | -- |
| 609.41 | 1.15 | 8.64 | 0.667 | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
| 249.47 | 0.739 | 8.63 | -- | 2.47 | -- | -- | -- | 0.212 | 13.7 | -- | -- | -- | -- |
| 232.38 | 0.71 | 8.66 | -- | -- | 2.09 | -- | -- | 0.155 | -- | 1.055 | 256 | -- | -- |
| 621.14 | 1.16 | 8.65 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.08 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 2 | 163.09 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 4 | 163.87 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 9 | 164.84 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 10 | 164.88 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 16 | 165.25 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 27 | 165.45 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 44 | 166.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 47 | 166.67 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 89 | 168.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 121 | 169.94 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 145 | 170.98 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 177 | 171.67 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 194 | 172.08 | radiation | 20 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 278 | 173.45 | radiation | 20 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 283 | 173.50 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 284 | 173.50 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 322 | 174.53 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 344 | 174.70 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 352 | 174.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 353 | 174.80 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 420 | 175.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 476 | 175.66 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 524 | 176.14 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 554 | 176.32 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 568 | 176.36 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 589 | 176.48 | humidity | 50 | 720 | > th | dose dependent | sin | 19 | NA |
| 611 | 176.57 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 665 | 176.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 691 | 176.98 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 19 |
| 704 | 177.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 744 | 177.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 809 | 177.46 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 842 | 177.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 888 | 177.84 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 7 |
| 914 | 177.90 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 919 | 177.93 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |