Os11g0692000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0692000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.79 | 0.332 | 8.11 | 1.74 | 0.669 | 0.447 | -0.117 | -1.67 | 0.518 | 17.4 | 70 | 1562 | -- | -- |
| 52.58 | 0.338 | 8.11 | 1.55 | 0.611 | 0.398 | -0.0316 | -- | 0.477 | 18 | 72.04 | 1172 | -- | -- |
| 49.82 | 0.329 | 8.11 | 1.74 | 0.663 | 0.447 | -- | -1.66 | 0.518 | 17.4 | 70 | 1543 | -- | -- |
| 52.57 | 0.338 | 8.11 | 1.57 | 0.622 | 0.401 | -- | -- | 0.487 | 18 | 72.86 | 1171 | -- | -- |
| 68.59 | 0.386 | 8.09 | 1.71 | -- | 0.585 | -- | -1.49 | 0.519 | -- | 70.39 | 1295 | -- | -- |
| 54.82 | 0.347 | 8.12 | 1.58 | 0.631 | -- | 0.0017 | -- | 0.439 | 17.5 | -- | -- | -- | -- |
| 54.82 | 0.347 | 8.12 | 1.58 | 0.631 | -- | -- | -- | 0.439 | 17.5 | -- | -- | -- | -- |
| 71.18 | 0.393 | 8.1 | 1.54 | -- | 0.547 | -- | -- | 0.483 | -- | 74 | 1281 | -- | -- |
| 113.71 | 0.497 | 8.14 | -- | 0.608 | 0.686 | -- | -- | 0.37 | 17.2 | 84.99 | 1586 | -- | -- |
| 75.52 | 0.406 | 8.11 | 1.56 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 120.56 | 0.514 | 8.16 | -- | 0.606 | -- | -- | -- | 0.263 | 17.7 | -- | -- | -- | -- |
| 130.81 | 0.533 | 8.09 | -- | -- | 0.751 | -- | -- | 0.382 | -- | 84 | 1268 | -- | -- |
| 139.61 | 0.552 | 8.15 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 3 | 48.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 7 | 48.43 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 10 |
| 8 | 48.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 23 | 48.78 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 20 |
| 24 | 48.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 25 | 48.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 26 | 48.80 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 16 |
| 27 | 48.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 41 | 48.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 50 | 49.00 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 71 | 49.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 77 | 49.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 80 | 49.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 85 | 49.18 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 86 | 49.19 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 87 | 49.19 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 89 | 49.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 93 | 49.20 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 106 | 49.24 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 114 | 49.24 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 119 | 49.25 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 121 | 49.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 128 | 49.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 175 | 49.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 211 | 49.40 | humidity | 90 | 270 | > th | dose independent | rect. | 10 | 21 |
| 220 | 49.42 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 221 | 49.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 267 | 49.49 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 22 |
| 282 | 49.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 294 | 49.53 | radiation | 20 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 307 | 49.54 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 311 | 49.55 | humidity | 90 | 270 | > th | dose independent | rect. | 16 | 15 |
| 312 | 49.55 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 21 |
| 337 | 49.59 | humidity | 90 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 338 | 49.59 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 10 |
| 344 | 49.59 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 348 | 49.60 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 367 | 49.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 389 | 49.63 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 425 | 49.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 430 | 49.66 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 440 | 49.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 451 | 49.68 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 2 |
| 453 | 49.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 456 | 49.68 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 0 | NA |
| 458 | 49.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 474 | 49.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 491 | 49.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 492 | 49.70 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 495 | 49.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 547 | 49.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 556 | 49.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 582 | 49.74 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 585 | 49.74 | humidity | 90 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 589 | 49.75 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 13 |
| 607 | 49.76 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 22 | 11 |
| 617 | 49.77 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 664 | 49.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 665 | 49.79 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 674 | 49.79 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 684 | 49.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 693 | 49.80 | humidity | 60 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 777 | 49.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 827 | 49.86 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 8 | NA |
| 834 | 49.86 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 839 | 49.87 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 891 | 49.89 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 893 | 49.89 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 915 | 49.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 948 | 49.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 1 |