Os11g0691800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bacterial blight resistance protein.
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Os11g0691800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bacterial blight resistance protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.1 | 0.564 | 4.58 | 1 | 1.06 | -1.65 | 0.194 | -2.22 | 1.05 | 3.25 | 25.69 | 3569 | -- | -- |
| 148.89 | 0.568 | 4.65 | 0.612 | 1.05 | -1.36 | 0.192 | -- | 0.987 | 3.24 | 28.02 | 3556 | -- | -- |
| 144.2 | 0.559 | 4.58 | 1 | 1.06 | -1.65 | -- | -2.25 | 1.05 | 3.29 | 25.69 | 3584 | -- | -- |
| 149.02 | 0.569 | 4.65 | 0.581 | 1.06 | -1.38 | -- | -- | 0.977 | 3.31 | 28.25 | 3579 | -- | -- |
| 198.44 | 0.656 | 4.61 | 1.08 | -- | -1.72 | -- | -2.01 | 1.03 | -- | 26.3 | 2516 | -- | -- |
| 180.68 | 0.63 | 4.58 | 1.2 | 1.11 | -- | 0.298 | -- | 1.3 | 2.96 | -- | -- | -- | -- |
| 180.96 | 0.63 | 4.58 | 1.19 | 1.11 | -- | -- | -- | 1.3 | 3.04 | -- | -- | -- | -- |
| 203.71 | 0.665 | 4.67 | 0.594 | -- | -1.57 | -- | -- | 0.924 | -- | 27.22 | 2550 | -- | -- |
| 155.38 | 0.581 | 4.68 | -- | 1.07 | -1.7 | -- | -- | 0.827 | 3.28 | 26.44 | 3605 | -- | -- |
| 251.7 | 0.741 | 4.58 | 1.24 | -- | -- | -- | -- | 1.33 | -- | -- | -- | -- | -- |
| 218.35 | 0.691 | 4.61 | -- | 1.13 | -- | -- | -- | 1.17 | 3.04 | -- | -- | -- | -- |
| 210.9 | 0.676 | 4.69 | -- | -- | -1.85 | -- | -- | 0.794 | -- | 26.69 | 2562 | -- | -- |
| 292.16 | 0.798 | 4.61 | -- | -- | -- | -- | -- | 1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.02 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 2 | 143.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 4 | 144.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 15 | 145.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 16 | 145.27 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 20 | 145.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 24 | 145.45 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 20 |
| 31 | 145.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 52 | 145.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 58 | 145.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 68 | 146.22 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 80 | 146.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 87 | 146.43 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 90 | 146.45 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 91 | 146.45 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 106 | 146.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 113 | 146.55 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 138 | 146.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 162 | 146.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 17 |
| 171 | 146.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 12 |
| 176 | 146.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 227 | 146.89 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 228 | 146.89 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 259 | 146.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 288 | 147.02 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 426 | 147.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 453 | 147.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 527 | 147.49 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 598 | 147.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 602 | 147.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 21 |
| 636 | 147.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 638 | 147.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 648 | 147.69 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 700 | 147.74 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 717 | 147.76 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 727 | 147.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 738 | 147.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 783 | 147.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 794 | 147.85 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |