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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0691100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.03) R2 : 0.00275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0708 (0.0631) R2dN8 : 0.00356 R2N8 : 0.00275
σ : 0.564
deviance : 146.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.42 0.553 2.82 -0.0438 0.122 -0.491 0.316 0.131 0.077 20.8 1.103 16 -- --
138.44 0.548 2.82 -0.0378 0.121 -0.482 0.314 -- 0.0785 20.8 1.128 16 -- --
138.68 0.548 2.82 -0.0564 0.132 -0.513 -- 0.136 0.078 19.7 1.119 16 -- --
138.7 0.549 2.82 -0.0498 0.131 -0.503 -- -- 0.0796 19.7 1.146 16 -- --
139.57 0.55 2.82 -0.0486 -- -0.466 -- 0.0712 0.0765 -- 1.132 16 -- --
144.43 0.563 2.82 0.0319 0.126 -- 0.381 -- 0.073 0.567 -- -- -- --
145.04 0.564 2.82 0.0173 0.125 -- -- -- 0.0709 0.791 -- -- -- --
139.57 0.55 2.82 -0.0454 -- -0.461 -- -- 0.0774 -- 1.134 16 -- --
138.77 0.549 2.82 -- 0.13 -0.496 -- -- 0.085 19.8 1.145 16 -- --
146.02 0.565 2.82 0.0218 -- -- -- -- 0.0732 -- -- -- -- --
145.05 0.563 2.82 -- 0.125 -- -- -- 0.069 0.797 -- -- -- --
139.63 0.55 2.82 -- -- -0.455 -- -- 0.0823 -- 1.165 16 -- --
146.03 0.564 2.82 -- -- -- -- -- 0.0708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.76 temperature 20.0 30 > th dose independent rect. 2 1
2 132.76 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 132.79 wind 3.0 30 < th dose independent rect. 2 1
4 132.80 atmosphere 995.0 30 > th dose dependent rect. 2 1
6 132.81 temperature 25.0 30 < th dose independent rect. 2 1
7 132.81 humidity 80.0 30 > th dose independent rect. 2 1
8 132.81 atmosphere 1000.0 30 > th dose independent rect. 2 1
9 132.81 temperature 20.0 30 > th dose dependent rect. 2 1
11 132.82 temperature 10.0 30 > th dose dependent rect. 2 1
13 132.82 humidity 70.0 30 > th dose dependent rect. 2 1
17 132.83 wind 3.0 30 < th dose dependent rect. 2 1
21 132.83 humidity 50.0 30 > th dose dependent rect. 2 1
24 132.84 temperature 10.0 30 > th dose independent rect. 2 1
27 132.84 humidity 50.0 30 > th dose independent rect. 2 1
31 132.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 132.84 radiation 1.0 30 < th dose independent rect. 2 1
38 132.84 precipitation 0.1 30 < th dose independent rect. 2 1
39 132.84 temperature 10.0 30 > th dose independent rect. 3 23
40 132.84 radiation 1.0 30 < th dose dependent rect. 2 1
45 132.84 precipitation 0.1 30 < th dose dependent rect. 2 1
47 132.87 temperature 30.0 30 < th dose dependent rect. 2 1
49 132.91 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 132.93 wind 1.0 30 > th dose independent rect. 2 1
105 133.34 wind 9.0 30 < th dose independent rect. 3 23
106 133.66 precipitation 0.1 30 < th dose independent rect. 3 23
107 133.66 precipitation 0.1 30 < th dose dependent rect. 3 23
111 133.76 atmosphere 995.0 10 > th dose independent rect. 3 23
122 134.43 radiation 1.0 90 < th dose independent rect. 10 1
124 134.43 radiation 1.0 10 < th dose independent rect. 7 5
126 134.43 radiation 1.0 90 < th dose dependent rect. 10 1
128 134.43 radiation 1.0 10 < th dose dependent rect. 7 5
133 135.01 wind 9.0 1440 < th dose independent rect. 3 1
134 135.01 temperature 10.0 1440 > th dose independent rect. 3 1
137 135.01 temperature 30.0 1440 < th dose independent rect. 3 1
141 135.01 humidity 50.0 1440 > th dose independent rect. 3 1
150 135.01 atmosphere 995.0 1440 > th dose independent rect. 3 1
151 135.01 radiation 1.0 1440 < th dose independent rect. 3 1
171 135.01 temperature 10.0 1440 > th dose independent rect. 4 23
174 135.01 radiation 1.0 1440 < th dose dependent rect. 3 1
195 135.34 radiation 10.0 10 < th dose dependent rect. 11 1
200 135.86 radiation 1.0 10 < th dose independent rect. 11 1
247 136.73 humidity 50.0 30 > th dose independent rect. 3 23
249 136.78 wind 1.0 10 < th dose independent rect. 23 4
260 137.22 wind 1.0 10 > th dose independent sin 14 NA
263 137.32 humidity 90.0 90 < th dose independent rect. 2 1
270 137.38 atmosphere 1015.0 30 < th dose independent rect. 3 23
284 137.52 wind 3.0 30 < th dose dependent rect. 23 4
389 138.46 wind 1.0 30 > th dose independent rect. 3 23
391 138.54 humidity 90.0 10 > th dose independent rect. 24 3
427 138.71 wind 1.0 10 < th dose independent rect. 5 22
476 139.15 temperature 30.0 30 < th dose independent rect. 3 23
483 139.17 wind 9.0 30 < th dose dependent rect. 3 23
538 139.58 wind 1.0 10 > th dose independent no NA NA
549 139.64 temperature 25.0 270 > th dose dependent rect. 23 4
555 139.65 wind 1.0 10 > th dose independent rect. 17 12
556 139.65 wind 1.0 30 > th dose dependent rect. 2 1
594 139.73 temperature 25.0 270 > th dose dependent rect. 23 7
604 139.81 wind 1.0 10 > th dose independent rect. 16 23
683 139.94 wind 1.0 10 < th dose independent sin 14 NA
690 139.96 wind 1.0 10 > th dose independent rect. 20 15
695 139.99 wind 1.0 10 > th dose independent rect. 17 18
723 140.02 wind 1.0 10 > th dose independent rect. 20 13
734 140.06 wind 1.0 10 > th dose independent rect. 17 16
756 140.14 wind 1.0 30 < th dose dependent rect. 11 16
779 140.24 temperature 30.0 1440 > th dose dependent rect. 8 1
797 140.25 atmosphere 1015.0 1440 < th dose independent rect. 3 1
808 140.28 radiation 40.0 30 < th dose dependent rect. 3 23
820 140.34 radiation 10.0 30 < th dose dependent rect. 3 23
830 140.38 wind 1.0 10 > th dose independent rect. 1 23
845 140.39 temperature 30.0 10 > th dose independent rect. 15 1
881 140.48 wind 1.0 10 > th dose independent rect. 12 23
884 140.49 wind 1.0 10 > th dose independent rect. 21 23
941 140.61 atmosphere 995.0 30 > th dose dependent rect. 3 23
954 140.66 temperature 30.0 4320 < th dose independent rect. 4 5
958 140.68 temperature 30.0 1440 > th dose independent rect. 8 1
998 140.72 radiation 1.0 30 < th dose independent rect. 3 23