FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0689100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0195) R2 : 0.0227
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.134 (0.0411) R2dN8 : 0.0293 R2N8 : 0.0227
σ : 0.368
deviance : 62.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.68 0.357 2.98 -0.104 0.0332 -0.403 -0.381 0.484 0.123 7.41 1.1 16 -- --
57.88 0.354 2.97 -0.0858 0.0383 -0.367 -0.405 -- 0.128 7.06 1.1 16 -- --
58.08 0.355 2.98 -0.11 0.0327 -0.402 -- 0.508 0.125 7.56 1.1 16 -- --
58.31 0.356 2.97 -0.0925 0.0381 -0.365 -- -- 0.129 7.21 1.072 16 -- --
58.13 0.355 2.98 -0.115 -- -0.416 -- 0.533 0.124 -- 1.067 16 -- --
60.94 0.366 2.97 -0.045 0.129 -- -0.346 -- 0.125 5.9 -- -- -- --
61.19 0.366 2.97 -0.0485 0.13 -- -- -- 0.126 5.11 -- -- -- --
58.38 0.356 2.97 -0.0939 -- -0.379 -- -- 0.13 -- 1.072 16 -- --
58.53 0.356 2.97 -- 0.0399 -0.351 -- -- 0.14 7.14 1.048 16 -- --
62.08 0.368 2.97 -0.0439 -- -- -- -- 0.129 -- -- -- -- --
61.25 0.366 2.97 -- 0.129 -- -- -- 0.131 5.12 -- -- -- --
58.61 0.357 2.97 -- -- -0.367 -- -- 0.14 -- 1.084 16 -- --
62.13 0.368 2.97 -- -- -- -- -- 0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.79 temperature 30.0 30 < th dose dependent rect. 2 1
2 49.81 wind 3.0 30 < th dose independent rect. 2 1
3 49.81 temperature 25.0 30 < th dose independent rect. 2 1
6 49.83 humidity 80.0 30 > th dose independent rect. 2 1
7 49.83 wind 3.0 30 < th dose dependent rect. 2 1
12 49.84 temperature 10.0 30 > th dose independent rect. 2 1
15 49.84 humidity 50.0 30 > th dose independent rect. 2 1
18 49.84 atmosphere 995.0 30 > th dose independent rect. 2 1
21 49.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 49.84 radiation 1.0 30 < th dose independent rect. 2 1
28 49.84 precipitation 0.1 30 < th dose independent rect. 2 1
29 49.84 temperature 10.0 30 > th dose independent rect. 3 23
30 49.84 atmosphere 995.0 30 > th dose dependent rect. 2 1
31 49.84 radiation 1.0 30 < th dose dependent rect. 2 1
36 49.84 precipitation 0.1 30 < th dose dependent rect. 2 1
39 49.85 humidity 50.0 30 > th dose dependent rect. 2 1
43 49.87 wind 9.0 30 < th dose independent rect. 3 23
44 49.87 temperature 10.0 30 > th dose dependent rect. 2 1
48 49.90 atmosphere 1015.0 30 < th dose dependent rect. 2 1
63 50.08 wind 1.0 30 > th dose independent rect. 2 1
108 51.64 precipitation 0.1 30 < th dose independent rect. 3 23
109 51.64 precipitation 0.1 30 < th dose dependent rect. 3 23
113 52.03 atmosphere 995.0 30 > th dose independent rect. 3 23
127 52.93 radiation 1.0 14400 < th dose dependent rect. 3 1
133 53.02 wind 9.0 1440 < th dose independent rect. 3 1
134 53.02 temperature 10.0 1440 > th dose independent rect. 3 1
137 53.02 temperature 30.0 1440 < th dose independent rect. 3 1
141 53.02 humidity 50.0 1440 > th dose independent rect. 3 1
150 53.02 atmosphere 995.0 1440 > th dose independent rect. 3 1
151 53.02 radiation 1.0 1440 < th dose independent rect. 3 1
171 53.02 temperature 10.0 1440 > th dose independent rect. 4 23
174 53.02 radiation 1.0 1440 < th dose dependent rect. 3 1
192 53.41 humidity 50.0 30 > th dose independent rect. 3 23
193 53.57 wind 1.0 30 < th dose independent rect. 24 3
204 54.10 wind 1.0 10 < th dose independent rect. 15 12
206 54.11 wind 1.0 10 < th dose independent rect. 17 10
213 54.17 atmosphere 1015.0 30 < th dose independent rect. 3 23
239 55.17 temperature 30.0 30 < th dose independent rect. 3 23
262 55.49 humidity 90.0 90 < th dose independent rect. 1 2
336 56.15 wind 9.0 30 < th dose dependent rect. 3 23
341 56.22 wind 1.0 30 > th dose dependent rect. 2 1
356 56.38 wind 1.0 10 > th dose independent sin 15 NA
384 56.60 atmosphere 1015.0 1440 < th dose independent rect. 3 1
432 56.80 temperature 25.0 270 > th dose independent rect. 23 9
466 57.15 temperature 10.0 30 > th dose dependent rect. 3 23
475 57.21 humidity 50.0 30 > th dose dependent rect. 3 23
482 57.31 humidity 90.0 90 < th dose independent rect. 1 4
511 57.42 wind 1.0 30 < th dose dependent rect. 9 18
514 57.44 wind 1.0 10 < th dose independent sin 15 NA
515 57.44 temperature 25.0 10 < th dose independent rect. 24 3
517 57.46 wind 1.0 30 < th dose dependent rect. 11 16
540 57.55 temperature 25.0 270 > th dose dependent rect. 23 9
552 57.59 radiation 10.0 10 < th dose dependent rect. 3 23
578 57.66 wind 1.0 10 > th dose independent rect. 18 13
590 57.76 wind 1.0 10 > th dose independent rect. 3 23
592 57.76 wind 1.0 10 > th dose independent rect. 9 23
593 57.76 radiation 10.0 10 < th dose independent rect. 3 23
610 57.84 temperature 25.0 1440 < th dose independent rect. 1 1
626 57.90 temperature 25.0 1440 > th dose independent rect. 1 1
672 57.98 humidity 80.0 4320 < th dose dependent rect. 1 1
697 58.06 wind 1.0 10 > th dose independent rect. 12 19
744 58.10 wind 1.0 10 > th dose independent rect. 16 15
793 58.19 wind 1.0 10 > th dose independent no NA NA
809 58.24 wind 1.0 10 > th dose independent rect. 21 10
819 58.27 wind 9.0 720 < th dose independent rect. 3 12
821 58.27 radiation 40.0 90 < th dose dependent rect. 13 14
823 58.28 wind 1.0 10 > th dose independent rect. 14 17
843 58.33 radiation 40.0 90 < th dose dependent rect. 15 12
859 58.37 atmosphere 1000.0 720 > th dose independent rect. 3 12
867 58.39 temperature 10.0 720 > th dose independent rect. 3 12
868 58.39 temperature 10.0 720 > th dose independent rect. 15 12
869 58.39 precipitation 0.1 720 < th dose independent rect. 15 12
873 58.39 precipitation 0.1 720 < th dose dependent rect. 15 12
899 58.45 wind 1.0 10 > th dose independent rect. 21 23
907 58.48 atmosphere 1015.0 720 < th dose independent rect. 3 12
912 58.50 precipitation 0.1 720 < th dose independent rect. 15 1
913 58.50 humidity 50.0 720 > th dose independent rect. 3 12
914 58.50 precipitation 0.1 720 < th dose dependent rect. 15 1
917 58.51 wind 1.0 720 > th dose independent rect. 15 1
923 58.52 temperature 10.0 720 > th dose independent rect. 15 1
925 58.52 atmosphere 1015.0 720 < th dose independent rect. 15 1
928 58.52 precipitation 0.1 720 < th dose independent rect. 3 12
931 58.52 temperature 10.0 720 > th dose independent rect. 16 23
934 58.52 precipitation 0.1 720 < th dose dependent rect. 3 12
938 58.53 temperature 25.0 1440 > th dose dependent rect. 1 1
943 58.54 humidity 50.0 720 > th dose dependent rect. 3 1
948 58.55 humidity 80.0 4320 < th dose independent rect. 1 2
950 58.55 wind 9.0 90 < th dose independent rect. 3 12
990 58.60 precipitation 0.1 90 < th dose independent rect. 15 12
992 58.60 precipitation 0.1 90 < th dose dependent rect. 15 12