FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0688000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0227) R2 : 0.00119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0352 (0.0478) R2dN8 : 0.00153 R2N8 : 0.00119
σ : 0.428
deviance : 83.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.39 0.421 3.08 0.549 0.0309 -0.285 0.081 1.02 0.213 10.9 19.28 6177 -- --
80.98 0.419 3.13 0.285 0.0323 -0.379 0.00473 -- 0.135 8.31 0.9822 6199 -- --
79.71 0.416 3.05 0.977 0.0606 -0.417 -- 2.64 0.329 10.6 27.18 7459 -- --
80.98 0.419 3.13 0.285 0.0316 -0.386 -- -- 0.135 8.94 1.768 6184 -- --
79.85 0.416 3.04 1.01 -- -0.46 -- 2.81 0.347 -- 27.42 7485 -- --
83.53 0.428 3.15 0.0934 0.0374 -- 0.0972 -- 0.0458 10.7 -- -- -- --
83.56 0.428 3.15 0.0968 0.0406 -- -- -- 0.0457 9.29 -- -- -- --
81.03 0.419 3.13 0.288 -- -0.392 -- -- 0.137 -- 9.274 6241 -- --
82.57 0.423 3.14 -- 0.0365 -0.23 -- -- 0.0754 8.55 2.314 6142 -- --
83.65 0.427 3.15 0.0966 -- -- -- -- 0.0459 -- -- -- -- --
83.81 0.428 3.15 -- 0.0407 -- -- -- 0.0349 9.11 -- -- -- --
82.64 0.423 3.14 -- -- -0.232 -- -- 0.0764 -- 4.786 6204 -- --
83.9 0.428 3.15 -- -- -- -- -- 0.0352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.12 humidity 90.0 10 > th dose dependent rect. 2 1
2 73.24 atmosphere 1005.0 90 > th dose dependent rect. 1 2
4 73.63 wind 9.0 10 < th dose independent rect. 3 23
6 73.72 wind 3.0 10 < th dose dependent rect. 2 1
7 73.73 wind 3.0 10 < th dose independent rect. 2 1
17 73.84 humidity 90.0 10 > th dose independent rect. 2 1
18 73.85 temperature 30.0 10 < th dose dependent rect. 2 1
19 73.86 temperature 15.0 10 > th dose independent rect. 3 23
21 73.87 temperature 10.0 10 > th dose independent rect. 2 1
23 73.87 temperature 30.0 10 < th dose independent rect. 2 1
24 73.87 humidity 50.0 10 > th dose independent rect. 2 1
27 73.87 atmosphere 995.0 10 > th dose independent rect. 2 1
28 73.87 atmosphere 1010.0 10 < th dose independent rect. 2 1
30 73.87 radiation 1.0 10 < th dose independent rect. 2 1
35 73.87 precipitation 0.1 10 < th dose independent rect. 2 1
37 73.87 radiation 1.0 10 < th dose dependent rect. 2 1
42 73.87 precipitation 0.1 10 < th dose dependent rect. 2 1
44 73.93 atmosphere 1005.0 10 > th dose independent rect. 2 1
45 73.94 temperature 10.0 10 > th dose dependent rect. 2 1
46 73.94 atmosphere 995.0 10 > th dose dependent rect. 2 1
47 73.94 atmosphere 1005.0 10 > th dose dependent rect. 2 1
50 74.03 atmosphere 1015.0 10 < th dose dependent rect. 2 1
60 74.24 wind 1.0 30 > th dose independent rect. 2 1
114 74.67 radiation 1.0 43200 < th dose dependent rect. 3 1
118 75.00 precipitation 0.1 10 < th dose independent rect. 3 23
119 75.00 precipitation 0.1 10 < th dose dependent rect. 3 23
123 75.10 atmosphere 995.0 30 > th dose independent rect. 3 23
125 75.22 temperature 10.0 30 > th dose dependent rect. 3 23
140 75.47 wind 9.0 1440 < th dose independent rect. 3 1
141 75.47 temperature 10.0 1440 > th dose independent rect. 3 1
144 75.47 temperature 30.0 1440 < th dose independent rect. 3 1
148 75.47 humidity 50.0 1440 > th dose independent rect. 3 1
157 75.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
158 75.47 radiation 1.0 1440 < th dose independent rect. 3 1
179 75.47 temperature 10.0 1440 > th dose independent rect. 4 23
246 76.74 humidity 50.0 10 > th dose independent rect. 3 23
306 76.96 atmosphere 1015.0 1440 < th dose independent rect. 3 1
336 77.37 humidity 90.0 90 < th dose independent rect. 2 1
342 77.46 wind 9.0 10 > th dose independent rect. 18 1
345 77.46 wind 9.0 10 > th dose dependent rect. 18 1
348 77.46 temperature 10.0 720 > th dose dependent rect. 3 3
349 77.49 radiation 1.0 30 > th dose dependent rect. 18 1
380 77.62 wind 9.0 10 > th dose dependent rect. 18 4
439 77.83 humidity 60.0 270 > th dose independent rect. 12 11
452 78.00 wind 7.0 90 < th dose independent rect. 3 12
456 78.09 humidity 90.0 10 > th dose independent rect. 24 3
475 78.33 temperature 15.0 90 > th dose independent rect. 3 12
483 78.37 temperature 10.0 720 > th dose dependent rect. 3 6
502 78.41 atmosphere 1015.0 30 < th dose independent rect. 3 23
563 78.49 wind 9.0 90 < th dose dependent rect. 15 12
569 78.52 atmosphere 1015.0 720 < th dose independent rect. 3 12
716 78.74 wind 1.0 90 < th dose dependent rect. 9 1
720 78.77 wind 7.0 90 < th dose independent rect. 15 12
726 78.78 humidity 90.0 43200 < th dose independent rect. 6 2
741 78.82 temperature 10.0 720 > th dose dependent rect. 3 12
752 78.84 humidity 90.0 43200 > th dose independent rect. 6 1
775 78.91 wind 9.0 720 < th dose independent rect. 15 12
776 78.91 temperature 30.0 720 < th dose independent rect. 15 12
789 78.94 humidity 80.0 43200 > th dose dependent rect. 8 1
795 78.96 humidity 90.0 43200 > th dose dependent rect. 6 1
826 78.98 humidity 80.0 43200 > th dose dependent rect. 6 5
829 78.99 atmosphere 1015.0 720 < th dose independent rect. 1 14
849 79.03 wind 9.0 30 < th dose dependent rect. 3 23
852 79.05 humidity 80.0 43200 > th dose independent rect. 9 2
853 79.05 precipitation 0.1 720 < th dose independent rect. 3 12
856 79.05 precipitation 0.1 720 < th dose dependent rect. 3 12
861 79.06 temperature 15.0 720 > th dose independent rect. 3 12
870 79.08 radiation 1.0 14400 > th dose independent rect. 5 2
871 79.08 radiation 1.0 14400 < th dose independent rect. 5 2
883 79.09 humidity 50.0 720 > th dose independent rect. 3 12
887 79.10 radiation 1.0 14400 < th dose independent rect. 3 4
892 79.10 radiation 1.0 14400 < th dose independent rect. 21 10
893 79.10 radiation 1.0 14400 < th dose independent rect. 19 12
894 79.10 radiation 1.0 14400 > th dose independent rect. 18 13
895 79.10 humidity 90.0 43200 > th dose dependent rect. 18 2
930 79.14 humidity 60.0 270 < th dose independent rect. 16 4
945 79.14 wind 3.0 10 < th dose dependent rect. 22 5
950 79.16 wind 1.0 90 < th dose independent rect. 9 1
957 79.17 humidity 90.0 43200 > th dose independent rect. 4 9
974 79.19 humidity 80.0 43200 > th dose independent rect. 8 5
977 79.19 temperature 15.0 720 > th dose independent rect. 3 10
980 79.19 humidity 90.0 43200 > th dose dependent rect. 6 17
989 79.20 wind 1.0 10 < th dose independent rect. 15 12
992 79.20 radiation 20.0 270 > th dose dependent rect. 16 1