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Os11g0687100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : von Willebrand factor, type A domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.03 (0.0765) R2 : 0.652
β1 : -2.92 (0.316) R2dD : 0.0933 R2D : -0.0608
β2 : 1.36 (0.19) R2dC : 0.0398 R2C : 0.0115
β3 : -4.98 (0.277) R2dE : 0.405 R2E : 0.362
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.66 (0.183) R2dN8 : 0.116 R2N8 : 0.274
σ : 1.37
deviance : 869.04
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_____
C
peak time of C : 7.16
E
wheather : temperature
threshold : 21.03
memory length : 4678
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.00339
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
868.96 1.39 7.11 -3.37 1.33 -4.62 -0.4 1.94 1.54 7.13 20.9 4637 1.33 --
868.33 1.37 7.02 -2.81 1.37 -4.9 -0.801 -- 1.69 7.49 21.01 4687 0.000418 --
868.03 1.37 7.1 -3.29 1.37 -4.77 -- 1.61 1.55 7.06 20.9 4700 1.03 --
869.04 1.37 7.03 -2.92 1.36 -4.98 -- -- 1.66 7.16 21.03 4678 0.00339 --
956.45 1.44 7.14 -3.43 -- -4.56 -- 2.03 1.57 -- 20.86 4447 0.71 --
1486.1 1.81 6.65 0.073 1.27 -- 0.21 -- 3.37 6.66 -- -- -- --
1486.16 1.81 6.65 0.0773 1.27 -- -- -- 3.37 6.74 -- -- -- --
955.12 1.44 7.04 -3.24 -- -4.72 -- -- 1.7 -- 20.71 5737 8.93e-05 --
994.75 1.47 6.93 -- 1.28 -3.31 -- -- 2.11 7.43 22 4923 4.64 --
1570.28 1.85 6.67 0.106 -- -- -- -- 3.4 -- -- -- -- --
1486.32 1.8 6.65 -- 1.27 -- -- -- 3.37 6.74 -- -- -- --
1056.97 1.51 6.96 -- -- -3.39 -- -- 2.1 -- 22.42 4489 8.02 --
1570.58 1.85 6.67 -- -- -- -- -- 3.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 800.69 humidity 70 43200 < th dose dependent rect. 8 1
2 806.43 humidity 60 43200 < th dose dependent rect. 9 3
4 806.77 atmosphere 1010 43200 < th dose independent rect. 2 1
6 807.44 humidity 60 43200 < th dose dependent rect. 24 12
13 808.13 radiation 1 43200 < th dose independent rect. 18 3
23 808.59 radiation 1 43200 < th dose independent rect. 18 9
31 808.93 atmosphere 1010 43200 > th dose independent rect. 3 1
38 809.74 humidity 60 43200 < th dose dependent rect. 11 1
49 810.40 atmosphere 1010 43200 > th dose independent rect. 2 3
74 811.62 atmosphere 1010 43200 > th dose independent rect. 22 8
80 811.82 radiation 1 43200 < th dose dependent rect. 18 11
93 812.45 temperature 20 14400 < th dose dependent rect. 5 1
106 813.27 temperature 20 14400 < th dose dependent rect. 1 2
112 813.62 atmosphere 1010 43200 > th dose independent rect. 23 1
142 815.11 radiation 10 43200 < th dose independent rect. 12 18
144 815.31 radiation 10 43200 < th dose independent rect. 12 7
145 815.31 radiation 10 43200 < th dose independent rect. 12 10
146 815.31 radiation 10 43200 < th dose independent rect. 12 12
162 815.62 humidity 60 43200 < th dose dependent sin 8 NA
190 816.16 temperature 20 14400 < th dose dependent rect. 1 5
235 817.68 atmosphere 1010 43200 > th dose independent sin 10 NA
247 817.86 radiation 10 43200 < th dose independent sin 15 NA
265 818.28 atmosphere 1010 43200 < th dose independent sin 10 NA
275 818.44 humidity 60 43200 > th dose independent rect. 8 1
375 820.23 atmosphere 1010 43200 > th dose independent rect. 17 19
385 820.38 humidity 70 43200 < th dose independent rect. 2 7
443 821.26 atmosphere 1010 43200 > th dose independent rect. 22 20
444 821.30 humidity 50 43200 > th dose independent rect. 10 1
453 821.40 radiation 1 43200 < th dose dependent rect. 18 9
465 821.54 atmosphere 1010 43200 > th dose independent rect. 11 20
469 821.59 atmosphere 1010 43200 < th dose independent rect. 17 19
479 821.68 atmosphere 1010 43200 < th dose independent rect. 15 21
524 822.02 atmosphere 1010 43200 < th dose independent rect. 11 20
533 822.10 radiation 1 43200 < th dose dependent rect. 18 3
595 822.58 atmosphere 1010 43200 < th dose independent rect. 22 21
633 822.79 atmosphere 1010 43200 > th dose independent no NA NA
664 823.11 humidity 60 43200 < th dose independent rect. 8 2
688 823.30 atmosphere 1010 43200 > th dose independent rect. 2 23
696 823.36 atmosphere 1010 43200 < th dose independent rect. 10 2
705 823.43 atmosphere 1010 43200 > th dose independent rect. 5 23
728 823.60 atmosphere 1010 43200 > th dose dependent rect. 21 5
747 823.78 humidity 70 43200 > th dose independent rect. 2 7
780 824.09 atmosphere 1010 43200 < th dose independent no NA NA
786 824.12 atmosphere 1010 43200 > th dose independent rect. 11 1
795 824.18 atmosphere 1010 43200 > th dose dependent rect. 1 1
852 824.82 atmosphere 1010 43200 < th dose independent rect. 2 23
927 825.76 humidity 50 43200 > th dose independent rect. 9 3
968 826.29 atmosphere 1010 43200 > th dose independent rect. 17 1