Os11g0687000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0687000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.16 | 0.843 | 3.1 | -0.116 | 0.0787 | 6.57 | 0.365 | -6 | -0.175 | 3.15 | 79.81 | 169 | 4.85 | 1.83 |
| 325.17 | 0.84 | 3.08 | -0.0445 | 0.0557 | 6.03 | 0.579 | -- | -0.127 | 2.3 | 80 | 159 | 4.85 | 2 |
| 322.3 | 0.836 | 3.11 | -0.136 | 0.117 | 6.52 | -- | -5.94 | -0.189 | 4.95 | 79.53 | 171 | 4.83 | 1.82 |
| 322.67 | 0.837 | 3.1 | -0.103 | 0.0588 | 5.36 | -- | -- | -0.203 | 2.51 | 77.45 | 147 | 5.05 | 1.78 |
| 322.9 | 0.837 | 3.1 | -0.122 | -- | 6.63 | -- | -6.31 | -0.175 | -- | 79.2 | 170 | 4.81 | 1.84 |
| 381.03 | 0.915 | 3.1 | -0.0961 | 0.237 | -- | -0.0948 | -- | -0.219 | 6.72 | -- | -- | -- | -- |
| 381.04 | 0.914 | 3.1 | -0.0981 | 0.237 | -- | -- | -- | -0.219 | 6.54 | -- | -- | -- | -- |
| 322.79 | 0.837 | 3.1 | -0.0888 | -- | 5.17 | -- | -- | -0.175 | -- | 77.64 | 145 | 5.05 | 1.77 |
| 322.25 | 0.836 | 3.09 | -- | 0.116 | 5 | -- | -- | -0.166 | 6.25 | 77.47 | 143 | 4.72 | 2.08 |
| 383.97 | 0.916 | 3.1 | -0.0922 | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
| 381.3 | 0.913 | 3.1 | -- | 0.236 | -- | -- | -- | -0.208 | 6.56 | -- | -- | -- | -- |
| 322.98 | 0.837 | 3.09 | -- | -- | 5.11 | -- | -- | -0.166 | -- | 77.44 | 145 | 4.7 | 2.09 |
| 384.2 | 0.915 | 3.1 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 322.96 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 3 | 333.21 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 4 | 334.02 | humidity | 80.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 5 | 335.20 | humidity | 80.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 6 | 335.76 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 24 | 341.60 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 26 | 341.63 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 43 | 346.84 | humidity | 90.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 49 | 347.20 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 59 | 348.17 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 61 | 348.22 | radiation | 10.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 85 | 349.38 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 95 | 349.77 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 96 | 349.78 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 98 | 349.82 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 6 |
| 102 | 349.97 | humidity | 80.0 | 720 | > th | dose independent | rect. | 22 | 9 |
| 104 | 350.03 | humidity | 80.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 105 | 350.16 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 108 | 350.21 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 139 | 351.35 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 3 |
| 159 | 351.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 174 | 352.23 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 179 | 352.49 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 184 | 352.59 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 215 | 353.36 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 239 | 353.70 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 272 | 354.23 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 6 |
| 290 | 354.64 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 293 | 354.64 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 305 | 354.80 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 317 | 355.00 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 323 | 355.00 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 376 | 355.44 | wind | 3.0 | 90 | > th | dose dependent | rect. | 24 | 8 |
| 421 | 355.95 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 436 | 356.00 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 501 | 356.58 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 536 | 357.02 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 573 | 357.44 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 582 | 357.59 | wind | 3.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 639 | 358.88 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 9 |
| 643 | 358.92 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 666 | 359.03 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 675 | 359.10 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 688 | 359.14 | humidity | 80.0 | 90 | < th | dose independent | rect. | 18 | 14 |
| 724 | 359.49 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 731 | 359.51 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 740 | 359.59 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 741 | 359.59 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 766 | 359.71 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 805 | 360.12 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 822 | 360.26 | wind | 1.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 827 | 360.30 | wind | 5.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 847 | 360.42 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 892 | 360.92 | wind | 3.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 904 | 361.04 | humidity | 80.0 | 720 | < th | dose independent | sin | 9 | NA |