Os11g0686500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0686500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.41 | 0.487 | 9.68 | 0.331 | 1.01 | -0.358 | 0.712 | 3.1 | 0.156 | 1.42 | 29.32 | 4600 | -- | -- |
| 108.6 | 0.485 | 9.74 | 0.618 | 0.968 | -0.79 | 0.613 | -- | 0.127 | 1.46 | 33.66 | 47520 | -- | -- |
| 109.35 | 0.487 | 9.68 | 0.329 | 1 | -0.358 | -- | 3.17 | 0.157 | 1.41 | 29.99 | 4601 | -- | -- |
| 109.12 | 0.487 | 9.7 | 0.76 | 0.991 | -0.809 | -- | -- | 0.31 | 1.51 | 53.64 | 47520 | -- | -- |
| 165.77 | 0.6 | 9.68 | 0.158 | -- | -0.356 | -- | 3.01 | 0.108 | -- | 29.14 | 6924 | -- | -- |
| 122.31 | 0.518 | 9.71 | 0.378 | 0.961 | -- | 0.906 | -- | 0.157 | 1.37 | -- | -- | -- | -- |
| 125.61 | 0.525 | 9.71 | 0.347 | 0.962 | -- | -- | -- | 0.152 | 1.48 | -- | -- | -- | -- |
| 164.22 | 0.597 | 9.63 | 1.42 | -- | -1.3 | -- | -- | 0.474 | -- | 49.83 | 47520 | -- | -- |
| 110.7 | 0.49 | 9.68 | -- | 0.962 | -0.65 | -- | -- | 0.195 | 1.38 | 60 | 41610 | -- | -- |
| 182.4 | 0.631 | 9.7 | 0.385 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 128.78 | 0.531 | 9.72 | -- | 0.968 | -- | -- | -- | 0.113 | 1.5 | -- | -- | -- | -- |
| 167.98 | 0.604 | 9.68 | -- | -- | -0.651 | -- | -- | 0.193 | -- | 60 | 41522 | -- | -- |
| 186.31 | 0.637 | 9.71 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.53 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 4 | 88.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 8 | 88.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 26 | 89.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 33 | 89.49 | humidity | 80 | 43200 | > th | dose dependent | sin | 14 | NA |
| 48 | 90.05 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 17 |
| 55 | 90.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 59 | 90.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 78 | 90.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 87 | 90.71 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 90 | 90.72 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 92 | 90.72 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 95 | 90.73 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 98 | 90.73 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 16 |
| 101 | 90.74 | temperature | 15 | 43200 | < th | dose dependent | sin | 4 | NA |
| 144 | 90.82 | temperature | 15 | 43200 | < th | dose dependent | rect. | 20 | 22 |
| 152 | 90.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 160 | 90.84 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 184 | 90.85 | humidity | 80 | 43200 | > th | dose dependent | sin | 7 | NA |
| 203 | 90.85 | temperature | 15 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 335 | 91.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 336 | 91.04 | temperature | 15 | 43200 | < th | dose dependent | sin | 15 | NA |
| 503 | 91.57 | temperature | 15 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 504 | 91.58 | temperature | 15 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 536 | 91.72 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 545 | 91.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 564 | 91.88 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 569 | 91.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 571 | 91.94 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 574 | 91.95 | humidity | 90 | 43200 | < th | dose independent | sin | 11 | NA |
| 597 | 92.05 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 598 | 92.06 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 604 | 92.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 633 | 92.20 | temperature | 15 | 43200 | < th | dose independent | sin | 2 | NA |
| 634 | 92.20 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 635 | 92.20 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 673 | 92.31 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 686 | 92.35 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 718 | 92.43 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 757 | 92.54 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 770 | 92.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 786 | 92.60 | temperature | 15 | 43200 | > th | dose independent | sin | 1 | NA |
| 834 | 92.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 873 | 92.71 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 884 | 92.73 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 900 | 92.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 906 | 92.76 | temperature | 15 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 959 | 92.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 15 |