Os11g0686400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0686400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.28 | 0.388 | 9.03 | 2.36 | 0.636 | -1.84 | 0.236 | 4.76 | 0.538 | 1.17 | 24.8 | 4597 | -- | -- |
| 73.53 | 0.399 | 9.15 | 1.47 | 0.752 | -1.47 | 0.561 | -- | 0.479 | 1.27 | 21.49 | 5327 | -- | -- |
| 68.5 | 0.385 | 9.03 | 2.37 | 0.634 | -1.83 | -- | 4.75 | 0.55 | 1.14 | 24.71 | 4608 | -- | -- |
| 72.72 | 0.397 | 9.13 | 1.35 | 0.713 | -1.47 | -- | -- | 0.507 | 1.29 | 21 | 5332 | -- | -- |
| 93.06 | 0.449 | 9.02 | 2.41 | -- | -1.81 | -- | 5.17 | 0.528 | -- | 25.3 | 4654 | -- | -- |
| 136.71 | 0.548 | 9.2 | 0.676 | 0.595 | -- | 0.146 | -- | 0.188 | 1.44 | -- | -- | -- | -- |
| 136.8 | 0.548 | 9.2 | 0.671 | 0.595 | -- | -- | -- | 0.187 | 1.43 | -- | -- | -- | -- |
| 83.88 | 0.428 | 9.13 | 1.03 | -- | -1.76 | -- | -- | 0.48 | -- | 21 | 5332 | -- | -- |
| 103.76 | 0.474 | 9.17 | -- | 0.625 | -1.1 | -- | -- | 0.314 | 1.18 | 22.24 | 1653 | -- | -- |
| 158.57 | 0.588 | 9.19 | 0.694 | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
| 148.66 | 0.57 | 9.22 | -- | 0.607 | -- | -- | -- | 0.112 | 1.47 | -- | -- | -- | -- |
| 110.81 | 0.492 | 9.16 | -- | -- | -1.55 | -- | -- | 0.337 | -- | 21 | 5332 | -- | -- |
| 171.29 | 0.611 | 9.21 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 2 | 65.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 3 | 65.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 6 | 66.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 12 | 66.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 14 | 66.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 15 | 66.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 21 | 66.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 28 | 66.27 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 33 | 66.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 34 | 66.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 39 | 66.36 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 50 | 66.46 | humidity | 90 | 43200 | > th | dose independent | sin | 9 | NA |
| 85 | 66.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 114 | 66.85 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 133 | 66.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 139 | 66.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 155 | 66.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 183 | 67.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 188 | 67.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 271 | 67.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 456 | 67.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 19 |
| 504 | 68.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 555 | 68.31 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 556 | 68.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 558 | 68.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 561 | 68.34 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 599 | 68.47 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 625 | 68.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 628 | 68.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 633 | 68.64 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 669 | 68.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 697 | 68.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 715 | 68.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 728 | 69.02 | temperature | 25 | 4320 | > th | dose dependent | sin | 0 | NA |
| 749 | 69.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 756 | 69.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 815 | 69.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 821 | 69.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 851 | 69.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 860 | 69.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 873 | 69.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 889 | 69.48 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 912 | 69.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 967 | 69.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |