Os11g0685400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0685400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.06 | 0.62 | 3.68 | 2.2 | 0.361 | -1.11 | 2.11 | 3.33 | 0.347 | 3.89 | 15.1 | 424 | -- | -- |
| 182.11 | 0.629 | 3.76 | 1.74 | 0.433 | -0.91 | 1.76 | -- | 0.198 | 3.56 | 15 | 516 | -- | -- |
| 184.53 | 0.633 | 3.69 | 2.16 | 0.598 | -0.896 | -- | 2.99 | 0.311 | 4.05 | 13.55 | 806 | -- | -- |
| 187.78 | 0.638 | 3.76 | 1.62 | 0.318 | -1.1 | -- | -- | 0.181 | 4.87 | 14.8 | 336 | -- | -- |
| 191.02 | 0.644 | 3.69 | 2.07 | -- | -1.5 | -- | 2.24 | 0.394 | -- | 15.3 | 387 | -- | -- |
| 194.83 | 0.654 | 3.78 | 1.39 | 0.62 | -- | 1.68 | -- | 0.038 | 4.43 | -- | -- | -- | -- |
| 201.64 | 0.665 | 3.78 | 1.38 | 0.65 | -- | -- | -- | 0.0292 | 5.11 | -- | -- | -- | -- |
| 186.56 | 0.636 | 3.77 | 1.57 | -- | -1.13 | -- | -- | 0.149 | -- | 24.33 | 328 | -- | -- |
| 250.17 | 0.737 | 3.81 | -- | 0.572 | -0.358 | -- | -- | -0.0822 | 5.03 | 4.68 | 312 | -- | -- |
| 223.79 | 0.699 | 3.79 | 1.4 | -- | -- | -- | -- | 0.0457 | -- | -- | -- | -- | -- |
| 251.72 | 0.742 | 3.82 | -- | 0.674 | -- | -- | -- | -0.124 | 5.04 | -- | -- | -- | -- |
| 250.83 | 0.738 | 3.81 | -- | -- | -0.924 | -- | -- | -0.0518 | -- | 24.68 | 276 | -- | -- |
| 275.61 | 0.775 | 3.83 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 4 | 169.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 5 | 169.24 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 22 | 169.57 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 43 | 169.78 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 47 | 169.94 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 57 | 170.27 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 83 | 170.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 92 | 170.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 107 | 170.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 119 | 171.03 | temperature | 15.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 129 | 171.15 | temperature | 20.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 139 | 171.24 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 140 | 171.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 169 | 171.59 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 213 | 171.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 223 | 171.89 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 231 | 171.93 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 235 | 171.96 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 239 | 171.97 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 241 | 171.98 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 246 | 171.99 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 323 | 172.32 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 335 | 172.42 | temperature | 10.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 342 | 172.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 355 | 172.52 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 374 | 172.70 | temperature | 30.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 393 | 172.77 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 398 | 172.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 417 | 172.89 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 453 | 173.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 481 | 173.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 526 | 173.35 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 16 |
| 527 | 173.36 | temperature | 30.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 530 | 173.37 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 2 |
| 531 | 173.37 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 553 | 173.49 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 13 |
| 561 | 173.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 581 | 173.58 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 583 | 173.58 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 616 | 173.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 632 | 173.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 635 | 173.69 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 664 | 173.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 667 | 173.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 686 | 173.79 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 698 | 173.81 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 731 | 173.88 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 21 |
| 756 | 173.92 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 2 |
| 770 | 173.95 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 801 | 174.00 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 3 |
| 805 | 174.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 858 | 174.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 924 | 174.20 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 937 | 174.22 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 945 | 174.25 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 973 | 174.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 23 |