Os11g0683800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0683800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Virulence factor, pectin lyase fold family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.78 | 0.639 | 3.05 | -0.962 | 0.0716 | 1.27 | 0.394 | -2.95 | -0.0505 | 8.68 | 999 | 5900 | -- | -- |
| 190.1 | 0.642 | 3.02 | -0.817 | 0.0615 | 1.08 | 0.46 | -- | -0.06 | 8.56 | 1002 | 6018 | -- | -- |
| 185.23 | 0.634 | 3.05 | -0.948 | 0.0718 | 1.27 | -- | -2.95 | -0.0481 | 10.4 | 998.9 | 5900 | -- | -- |
| 190.43 | 0.643 | 3.02 | -0.788 | 0.0811 | 1.04 | -- | -- | -0.0564 | 10.3 | 1002 | 6008 | -- | -- |
| 185.58 | 0.634 | 3.06 | -0.949 | -- | 1.27 | -- | -2.95 | -0.0491 | -- | 998.9 | 5893 | -- | -- |
| 209.9 | 0.679 | 3.04 | -0.691 | 0.0749 | -- | 0.382 | -- | -0.152 | 8.66 | -- | -- | -- | -- |
| 210.19 | 0.679 | 3.04 | -0.676 | 0.0889 | -- | -- | -- | -0.151 | 11.3 | -- | -- | -- | -- |
| 190.84 | 0.643 | 3.02 | -0.788 | -- | 1.05 | -- | -- | -0.0579 | -- | 1002 | 6008 | -- | -- |
| 206.41 | 0.669 | 3.01 | -- | 0.0869 | 0.91 | -- | -- | 0.0107 | 10.4 | 1002 | 6390 | -- | -- |
| 210.69 | 0.678 | 3.04 | -0.678 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 222.23 | 0.697 | 3.02 | -- | 0.0964 | -- | -- | -- | -0.0757 | 11.8 | -- | -- | -- | -- |
| 206.85 | 0.67 | 3 | -- | -- | 0.916 | -- | -- | 0.0202 | -- | 1002 | 6390 | -- | -- |
| 222.82 | 0.697 | 3.03 | -- | -- | -- | -- | -- | -0.0766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 2 | 185.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 3 | 185.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 12 | 186.55 | humidity | 90 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 15 | 186.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 20 | 186.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 22 | 186.90 | humidity | 80 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 42 | 187.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 43 | 187.86 | humidity | 90 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 59 | 188.68 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 64 | 188.80 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 66 | 188.82 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 70 | 188.90 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 75 | 189.12 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 76 | 189.12 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 82 | 189.18 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 99 | 189.35 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 101 | 189.36 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 1 | NA |
| 116 | 189.47 | atmosphere | 995 | 14400 | > th | dose independent | sin | 3 | NA |
| 126 | 189.49 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 136 | 189.49 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 138 | 189.51 | atmosphere | 995 | 14400 | < th | dose independent | sin | 3 | NA |
| 141 | 189.52 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 19 | NA |
| 199 | 189.79 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 203 | 189.80 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 211 | 189.80 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 224 | 189.81 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 231 | 189.82 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 240 | 189.84 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 245 | 189.85 | atmosphere | 995 | 14400 | < th | dose independent | no | NA | NA |
| 246 | 189.85 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 331 | 189.88 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 422 | 190.04 | atmosphere | 995 | 14400 | > th | dose independent | sin | 15 | NA |
| 445 | 190.08 | atmosphere | 995 | 14400 | < th | dose independent | sin | 15 | NA |
| 475 | 190.15 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 619 | 190.60 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 9 | NA |
| 641 | 190.64 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 19 | 16 |
| 817 | 191.00 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 823 | 191.01 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 10 | 20 |
| 828 | 191.02 | atmosphere | 1000 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 882 | 191.06 | atmosphere | 1000 | 14400 | < th | dose dependent | no | NA | NA |
| 920 | 191.11 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 965 | 191.16 | atmosphere | 1000 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 974 | 191.18 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 7 |