Os11g0683500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 1 protein.
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Os11g0683500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.19 | 0.734 | 8.62 | 0.764 | 5.64 | -2.06 | -1.04 | 5.18 | 0.0532 | 7.4 | 20.7 | 299 | 19.7 | 6.94 |
| 301.21 | 0.808 | 8.65 | 0.55 | 5.58 | -2.04 | -1.77 | -- | 0.0439 | 7.42 | 20.97 | 295 | 19.7 | 6.85 |
| 246.29 | 0.731 | 8.61 | 0.76 | 5.61 | -2.05 | -- | 5.37 | 0.0597 | 7.38 | 20.71 | 297 | 19.6 | 7.12 |
| 304.65 | 0.813 | 8.62 | 0.451 | 5.65 | -2.09 | -- | -- | 0.0342 | 7.5 | 20.94 | 287 | 20.4 | 6.18 |
| 530.51 | 1.07 | 8.46 | 1.32 | -- | -5.15 | -- | 8.21 | 0.963 | -- | 19.6 | 456 | 11.5 | 10.8 |
| 384 | 0.919 | 8.69 | 0.202 | 5.69 | -- | -2.2 | -- | -0.162 | 8.37 | -- | -- | -- | -- |
| 399.03 | 0.935 | 8.69 | 0.133 | 5.69 | -- | -- | -- | -0.163 | 8.34 | -- | -- | -- | -- |
| 382.35 | 0.911 | 8.78 | 0.932 | -- | -4.87 | -- | -- | 0.152 | -- | 19.27 | 376 | 11.6 | 11.8 |
| 302.71 | 0.81 | 8.65 | -- | 5.88 | -2.33 | -- | -- | -0.0258 | 7.47 | 20.92 | 329 | 20.5 | 5.6 |
| 2199.73 | 2.19 | 8.84 | 0.168 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 399.49 | 0.935 | 8.69 | -- | 5.7 | -- | -- | -- | -0.177 | 8.34 | -- | -- | -- | -- |
| 377.37 | 0.905 | 8.82 | -- | -- | -4.96 | -- | -- | 0.00265 | -- | 19.39 | 377 | 11 | 12.7 |
| 2200.48 | 2.19 | 8.84 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.69 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 7 |
| 4 | 257.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 6 | 258.94 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 18 | 265.17 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 14 |
| 22 | 266.29 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 10 |
| 27 | 268.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 30 | 269.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 68 | 273.15 | temperature | 15 | 270 | > th | dose dependent | sin | 13 | NA |
| 73 | 273.79 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 14 |
| 93 | 274.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 97 | 275.29 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 113 | 276.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 115 | 276.47 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 123 | 277.05 | temperature | 15 | 720 | > th | dose dependent | sin | 18 | NA |
| 210 | 280.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 231 | 281.40 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 5 |
| 245 | 281.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 255 | 282.14 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 323 | 284.85 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 355 | 285.87 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 1 |
| 413 | 287.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 442 | 289.10 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 21 |
| 461 | 289.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 495 | 290.49 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 7 |
| 606 | 293.70 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 4 |
| 614 | 293.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 661 | 294.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 702 | 295.56 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 2 |
| 721 | 295.98 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 771 | 296.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 776 | 296.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 788 | 297.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 902 | 299.31 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 915 | 299.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 976 | 300.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 983 | 300.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 999 | 300.65 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |