Os11g0682500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os11g0682500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.71 | 0.321 | 3.09 | -0.0812 | 0.138 | 1.06 | 0.281 | -2.73 | 0.0329 | 11.7 | 1012 | 293 | -- | -- |
| 50.78 | 0.332 | 3.09 | -0.124 | 0.151 | 1.26 | 0.384 | -- | 0.0243 | 11.7 | 1012 | 407 | -- | -- |
| 47.04 | 0.319 | 3.09 | -0.0717 | 0.137 | 1.04 | -- | -2.8 | 0.0316 | 11.4 | 1012 | 284 | -- | -- |
| 51.47 | 0.334 | 3.09 | -0.119 | 0.148 | 1.2 | -- | -- | 0.0259 | 11.5 | 1012 | 384 | -- | -- |
| 48.2 | 0.323 | 3.09 | -0.0721 | -- | 0.991 | -- | -2.91 | 0.0318 | -- | 1012 | 291 | -- | -- |
| 57.89 | 0.357 | 3.1 | -0.177 | 0.133 | -- | 0.295 | -- | -0.0071 | 11.7 | -- | -- | -- | -- |
| 58.27 | 0.357 | 3.1 | -0.165 | 0.132 | -- | -- | -- | -0.00605 | 11.5 | -- | -- | -- | -- |
| 52.8 | 0.338 | 3.09 | -0.12 | -- | 1.15 | -- | -- | 0.0251 | -- | 1012 | 457 | -- | -- |
| 51.83 | 0.335 | 3.09 | -- | 0.149 | 1.23 | -- | -- | 0.0389 | 11.5 | 1012 | 399 | -- | -- |
| 59.36 | 0.36 | 3.1 | -0.169 | -- | -- | -- | -- | -0.00744 | -- | -- | -- | -- | -- |
| 58.98 | 0.359 | 3.09 | -- | 0.134 | -- | -- | -- | 0.0123 | 11.5 | -- | -- | -- | -- |
| 53.16 | 0.34 | 3.09 | -- | -- | 1.17 | -- | -- | 0.0389 | -- | 1012 | 485 | -- | -- |
| 60.11 | 0.362 | 3.1 | -- | -- | -- | -- | -- | 0.0113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.95 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 5 | 47.12 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 15 | 47.12 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 25 | 47.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 29 | 47.17 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 33 | 47.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 34 | 47.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 51 | 47.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 59 | 47.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 72 | 47.37 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 82 | 47.37 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 124 | 47.56 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 125 | 47.56 | wind | 9 | 43200 | > th | dose dependent | sin | 7 | NA |
| 154 | 47.89 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 11 | 13 |
| 222 | 48.11 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 19 | NA |
| 227 | 48.13 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 232 | 48.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 243 | 48.28 | humidity | 60 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 266 | 48.35 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 267 | 48.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 18 |
| 282 | 48.39 | atmosphere | 1010 | 30 | > th | dose dependent | no | NA | NA |
| 283 | 48.39 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 285 | 48.39 | atmosphere | 1010 | 30 | > th | dose dependent | rect. | 23 | 14 |
| 377 | 48.40 | humidity | 70 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 569 | 48.49 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 587 | 48.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 588 | 48.52 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 14 |
| 589 | 48.53 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 592 | 48.54 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 594 | 48.56 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 630 | 48.63 | humidity | 50 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 631 | 48.63 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 632 | 48.63 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 6 | NA |
| 633 | 48.63 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 637 | 48.66 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 648 | 48.69 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 677 | 48.78 | humidity | 70 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 678 | 48.78 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 688 | 48.83 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 707 | 48.86 | humidity | 50 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 748 | 48.99 | humidity | 60 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 862 | 49.21 | humidity | 60 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 864 | 49.21 | humidity | 60 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 926 | 49.41 | humidity | 60 | 1440 | < th | dose dependent | rect. | 10 | 1 |