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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0681400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0189) R2 : 1.12e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000284 (0.0398) R2dN8 : 1.45e-07 R2N8 : 1.12e-07
σ : 0.356
deviance : 58.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.32 0.343 2.92 -0.467 0.0992 0.704 0.0471 -6.12 0.00543 10.2 30.3 15 -- --
57.13 0.355 2.88 -0.063 0.111 0.0874 0.0071 -- 0.00131 10 30.3 15 -- --
53.2 0.34 2.92 -0.458 0.103 0.72 -- -6.31 0.00635 9.91 30.4 13 -- --
57.07 0.352 2.88 -0.0597 0.111 0.0907 -- -- 0.00232 9.87 30.34 12 -- --
53.81 0.342 2.93 -0.459 -- 0.712 -- -6.21 0.00135 -- 30.46 10 -- --
57.32 0.355 2.88 -0.0549 0.115 -- 0.0223 -- -0.00541 10.7 -- -- -- --
57.33 0.355 2.88 -0.054 0.115 -- -- -- -0.00537 10.6 -- -- -- --
57.7 0.355 2.88 -0.0654 -- 0.138 -- -- 0.00267 -- 31.29 4 -- --
57.17 0.352 2.88 -- 0.112 0.0944 -- -- 0.00869 9.98 30.33 12 -- --
58.13 0.356 2.89 -0.0562 -- -- -- -- -0.00595 -- -- -- -- --
57.4 0.354 2.88 -- 0.115 -- -- -- 0.000642 10.7 -- -- -- --
57.81 0.355 2.88 -- -- 0.133 -- -- 0.00958 -- 31.27 7 -- --
58.22 0.356 2.89 -- -- -- -- -- 0.000284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.83 temperature 30.0 10 > th dose dependent rect. 11 1
3 52.89 temperature 30.0 90 > th dose independent rect. 11 1
6 52.96 temperature 30.0 10 > th dose independent rect. 11 1
135 53.55 temperature 30.0 10 > th dose dependent sin 7 NA
143 53.68 temperature 30.0 10 > th dose independent rect. 14 22
146 53.73 temperature 30.0 30 > th dose independent sin 7 NA
232 54.03 temperature 30.0 30 < th dose independent rect. 23 23
235 54.05 radiation 30.0 10 < th dose independent rect. 12 1
270 54.28 radiation 40.0 10 < th dose dependent rect. 12 1
294 54.36 radiation 40.0 43200 < th dose dependent rect. 23 1
299 54.41 radiation 40.0 90 < th dose independent rect. 10 13
304 54.45 humidity 90.0 30 < th dose independent rect. 22 1
305 54.45 radiation 20.0 4320 < th dose dependent rect. 23 1
309 54.46 wind 9.0 1440 < th dose independent rect. 23 1
311 54.46 temperature 10.0 1440 > th dose independent rect. 23 1
314 54.46 temperature 30.0 1440 < th dose independent rect. 23 1
318 54.46 humidity 50.0 1440 > th dose independent rect. 23 1
328 54.46 atmosphere 995.0 1440 > th dose independent rect. 23 1
330 54.46 radiation 1.0 1440 < th dose independent rect. 23 1
350 54.46 temperature 10.0 1440 > th dose independent rect. 24 23
353 54.46 radiation 1.0 1440 < th dose dependent rect. 23 1
359 54.47 temperature 10.0 30 > th dose dependent rect. 22 1
362 54.47 atmosphere 1005.0 30 > th dose dependent rect. 22 1
364 54.48 wind 1.0 30 > th dose independent rect. 22 1
365 54.48 wind 5.0 30 < th dose independent rect. 22 1
368 54.48 temperature 10.0 30 > th dose independent rect. 22 1
372 54.48 temperature 30.0 30 < th dose independent rect. 22 1
373 54.48 humidity 50.0 30 > th dose independent rect. 22 1
376 54.48 atmosphere 995.0 30 > th dose independent rect. 22 1
377 54.48 atmosphere 1005.0 30 > th dose independent rect. 22 1
378 54.48 atmosphere 1010.0 30 < th dose independent rect. 22 1
381 54.48 radiation 1.0 30 < th dose independent rect. 22 1
387 54.48 wind 9.0 30 < th dose independent rect. 23 23
388 54.48 temperature 10.0 30 > th dose independent rect. 23 23
389 54.48 wind 7.0 30 < th dose dependent rect. 22 1
391 54.48 humidity 90.0 30 < th dose dependent rect. 22 1
392 54.48 atmosphere 995.0 30 > th dose dependent rect. 22 1
394 54.48 radiation 1.0 30 < th dose dependent rect. 22 1
401 54.49 precipitation 0.1 30 < th dose independent rect. 22 1
404 54.49 humidity 50.0 30 > th dose dependent rect. 22 1
405 54.49 precipitation 0.1 30 < th dose dependent rect. 22 1
411 54.51 wind 1.0 30 > th dose dependent rect. 22 1
413 54.51 atmosphere 1015.0 30 < th dose dependent rect. 22 1
438 54.55 temperature 30.0 30 < th dose dependent rect. 22 1
451 54.59 precipitation 0.1 1440 > th dose independent rect. 12 1
455 54.59 precipitation 0.1 1440 > th dose dependent rect. 12 1
537 54.67 temperature 30.0 30 < th dose independent sin 4 NA
560 54.70 radiation 10.0 90 < th dose dependent rect. 11 1
579 54.71 wind 1.0 1440 > th dose independent rect. 17 1
614 54.73 wind 1.0 1440 < th dose independent rect. 17 1
632 54.78 wind 1.0 1440 < th dose dependent rect. 17 1
755 54.99 temperature 30.0 30 > th dose independent no NA NA
880 55.08 radiation 30.0 90 < th dose independent rect. 20 17
952 55.17 temperature 30.0 10 > th dose dependent no NA NA