Os11g0679700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lambda integrase-like, N-terminal domain containing protein.
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Os11g0679700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lambda integrase-like, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.01 | 0.81 | 5.61 | 0.589 | 1.05 | 2.17 | -0.722 | 0.44 | -0.134 | 12.4 | 79.91 | 1366 | -- | -- |
| 297.18 | 0.803 | 5.61 | 0.556 | 1.05 | 2.19 | -0.734 | -- | -0.14 | 12.4 | 80 | 1366 | -- | -- |
| 299.24 | 0.806 | 5.61 | 0.566 | 1.05 | 2.19 | -- | 0.511 | -0.138 | 12.5 | 79.75 | 1366 | -- | -- |
| 299.47 | 0.806 | 5.62 | 0.525 | 1.05 | 2.22 | -- | -- | -0.147 | 12.5 | 79.85 | 1366 | -- | -- |
| 345 | 0.865 | 5.63 | 0.554 | -- | 2.56 | -- | -0.264 | -0.163 | -- | 79.89 | 1587 | -- | -- |
| 356.68 | 0.885 | 5.58 | 0.633 | 0.957 | -- | -0.936 | -- | -0.0126 | 12 | -- | -- | -- | -- |
| 360.48 | 0.889 | 5.58 | 0.596 | 0.96 | -- | -- | -- | -0.0168 | 12.1 | -- | -- | -- | -- |
| 345.09 | 0.865 | 5.63 | 0.519 | -- | 2.52 | -- | -- | -0.148 | -- | 79.78 | 1587 | -- | -- |
| 306.31 | 0.815 | 5.62 | -- | 1.02 | 2.27 | -- | -- | -0.175 | 12.4 | 78.99 | 1382 | -- | -- |
| 418.55 | 0.956 | 5.61 | 0.565 | -- | -- | -- | -- | -0.0305 | -- | -- | -- | -- | -- |
| 369.83 | 0.9 | 5.6 | -- | 0.953 | -- | -- | -- | -0.0831 | 12 | -- | -- | -- | -- |
| 351.82 | 0.874 | 5.64 | -- | -- | 2.44 | -- | -- | -0.21 | -- | 78 | 1601 | -- | -- |
| 426.98 | 0.964 | 5.62 | -- | -- | -- | -- | -- | -0.0932 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 3 | 291.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 8 | 292.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 11 | 292.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 12 | 292.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 32 | 292.92 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 35 | 293.06 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 45 | 293.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 50 | 293.53 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 55 | 293.76 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 95 | 294.88 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 98 | 294.93 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 224 | 297.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 226 | 297.55 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 233 | 297.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 315 | 298.35 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 350 | 298.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 351 | 298.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 390 | 299.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 21 | 18 |
| 401 | 299.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 420 | 299.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 424 | 299.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 502 | 300.02 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 545 | 300.54 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 565 | 300.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 606 | 301.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 639 | 301.51 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 642 | 301.52 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 748 | 302.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 778 | 302.68 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 875 | 303.35 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 960 | 303.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 1 |