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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0677000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0272) R2 : 0.00233
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0591 (0.0572) R2dN8 : 0.00301 R2N8 : 0.00233
σ : 0.512
deviance : 120.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.97 0.499 2.6 2.09 0.15 -26.6 -0.696 162 -0.0604 12.8 994.8 747 -- --
116.42 0.506 2.97 -0.0801 0.134 -0.111 -0.74 -- -0.0654 12.9 994.8 747 -- --
114.92 0.499 2.61 2 0.155 -26.8 -- 163 -0.064 12 994.7 742 -- --
117.71 0.505 2.97 -0.123 0.151 0.426 -- -- -0.0492 12 994.5 824 -- --
116.43 0.503 2.62 2 -- -26.8 -- 163 -0.0671 -- 994.7 741 -- --
116.43 0.506 2.97 -0.0807 0.134 -- -0.742 -- -0.0652 12.9 -- -- -- --
118.6 0.51 2.97 -0.109 0.143 -- -- -- -0.0701 11.5 -- -- -- --
119.16 0.508 2.97 -0.124 -- 0.351 -- -- -0.0668 -- 994.5 810 -- --
118.04 0.506 2.96 -- 0.159 0.407 -- -- -0.0474 11.4 994.6 807 -- --
119.89 0.512 2.97 -0.113 -- -- -- -- -0.0716 -- -- -- -- --
118.91 0.51 2.96 -- 0.144 -- -- -- -0.058 11.5 -- -- -- --
119.57 0.509 2.97 -- -- 0.333 -- -- -0.0535 -- 994.5 794 -- --
120.22 0.512 2.97 -- -- -- -- -- -0.0591 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.00 wind 7.0 90 > th dose dependent rect. 13 1
2 108.18 wind 7.0 30 > th dose independent rect. 13 1
4 108.41 wind 7.0 10 > th dose dependent rect. 13 1
12 108.92 temperature 25.0 90 > th dose dependent rect. 2 1
14 109.17 atmosphere 1000.0 10 < th dose independent rect. 3 1
22 109.17 atmosphere 1000.0 10 < th dose dependent rect. 3 1
49 109.41 temperature 25.0 90 > th dose independent rect. 2 2
50 109.53 wind 1.0 10 < th dose independent rect. 6 1
111 111.61 radiation 1.0 30 < th dose dependent rect. 5 1
113 111.63 precipitation 0.1 270 > th dose independent rect. 2 1
114 111.63 precipitation 0.1 270 > th dose dependent rect. 2 1
117 111.72 atmosphere 1005.0 90 < th dose dependent rect. 7 1
127 111.81 wind 1.0 720 < th dose dependent rect. 24 1
136 112.00 temperature 25.0 90 > th dose independent rect. 23 5
141 112.04 radiation 40.0 30 > th dose dependent rect. 13 21
143 112.07 wind 1.0 30 < th dose independent rect. 7 3
144 112.07 wind 1.0 10 < th dose dependent rect. 6 1
155 112.20 temperature 25.0 270 > th dose dependent rect. 24 4
176 112.44 temperature 25.0 10 > th dose independent rect. 23 5
196 112.63 radiation 1.0 30 < th dose independent rect. 5 1
202 112.67 wind 1.0 720 < th dose independent rect. 24 1
209 112.73 humidity 70.0 30 > th dose independent rect. 8 23
231 112.86 wind 1.0 30 < th dose independent rect. 7 8
240 112.91 wind 5.0 270 > th dose dependent rect. 23 1
242 112.93 precipitation 0.1 270 > th dose independent rect. 22 1
244 112.93 precipitation 0.1 270 > th dose dependent rect. 22 1
245 112.94 atmosphere 995.0 720 < th dose independent rect. 16 1
249 112.94 atmosphere 995.0 720 < th dose dependent rect. 16 1
277 112.99 radiation 30.0 10 > th dose independent rect. 13 1
311 113.05 precipitation 0.1 270 > th dose independent rect. 22 5
317 113.05 atmosphere 1005.0 90 < th dose independent rect. 8 11
332 113.05 precipitation 0.1 270 > th dose dependent rect. 22 5
335 113.07 atmosphere 1005.0 90 > th dose independent rect. 9 8
341 113.08 atmosphere 1005.0 90 < th dose independent rect. 8 15
345 113.09 radiation 40.0 30 > th dose dependent sin 12 NA
356 113.12 wind 1.0 90 > th dose dependent rect. 23 7
358 113.13 atmosphere 1005.0 30 > th dose independent rect. 11 6
392 113.18 atmosphere 995.0 720 < th dose dependent sin 9 NA
394 113.19 atmosphere 1005.0 30 > th dose independent rect. 13 1
399 113.20 atmosphere 1005.0 270 > th dose independent rect. 9 5
401 113.20 wind 3.0 90 < th dose dependent rect. 13 2
416 113.26 radiation 1.0 90 < th dose independent rect. 10 4
418 113.26 radiation 1.0 90 < th dose dependent rect. 10 4
438 113.32 atmosphere 995.0 720 < th dose independent sin 9 NA
448 113.35 radiation 40.0 4320 < th dose independent rect. 15 9
450 113.36 atmosphere 995.0 720 > th dose independent sin 9 NA
456 113.37 wind 1.0 270 > th dose dependent rect. 23 1
470 113.42 wind 5.0 90 > th dose independent rect. 23 3
473 113.42 humidity 60.0 14400 > th dose independent rect. 24 7
478 113.43 humidity 90.0 4320 < th dose independent rect. 3 3
483 113.43 radiation 40.0 30 > th dose independent rect. 13 21
485 113.43 radiation 40.0 30 > th dose dependent rect. 13 1
486 113.43 humidity 90.0 4320 < th dose dependent rect. 5 2
497 113.43 radiation 1.0 30 < th dose dependent rect. 5 9
510 113.44 wind 5.0 270 > th dose independent rect. 23 1
514 113.44 wind 1.0 10 < th dose dependent rect. 7 8
521 113.45 humidity 50.0 4320 < th dose independent rect. 12 1
522 113.45 radiation 1.0 10 < th dose independent rect. 13 1
534 113.45 radiation 1.0 10 < th dose dependent rect. 13 1
544 113.45 humidity 90.0 4320 < th dose dependent rect. 3 5
566 113.49 atmosphere 1005.0 90 < th dose independent sin 21 NA
570 113.49 radiation 1.0 30 < th dose dependent rect. 5 7
580 113.51 temperature 20.0 30 > th dose independent rect. 7 10
602 113.52 humidity 60.0 30 > th dose dependent rect. 8 23
624 113.55 wind 1.0 10 < th dose dependent rect. 9 6
647 113.57 radiation 40.0 4320 < th dose independent rect. 15 14
654 113.58 atmosphere 1005.0 30 > th dose independent rect. 13 4
657 113.58 wind 5.0 90 > th dose independent rect. 23 7
663 113.59 radiation 40.0 4320 > th dose independent rect. 15 1
703 113.61 temperature 10.0 30 > th dose dependent rect. 6 16
713 113.62 wind 5.0 90 > th dose dependent rect. 23 7
726 113.64 radiation 40.0 4320 < th dose independent rect. 15 4
743 113.66 wind 1.0 1440 < th dose dependent rect. 21 1
751 113.68 radiation 1.0 720 < th dose independent rect. 5 2
752 113.68 radiation 1.0 720 < th dose independent rect. 5 6
767 113.69 humidity 70.0 720 > th dose dependent rect. 8 3
771 113.69 radiation 1.0 720 < th dose dependent rect. 5 6
773 113.70 humidity 80.0 14400 > th dose independent rect. 2 1
779 113.70 humidity 70.0 30 > th dose independent rect. 8 10
782 113.71 humidity 70.0 270 > th dose independent sin 8 NA
789 113.71 radiation 40.0 1440 > th dose dependent rect. 15 1
832 113.74 radiation 40.0 4320 < th dose independent rect. 15 1
839 113.75 wind 1.0 10 < th dose independent rect. 9 6
866 113.77 humidity 70.0 14400 > th dose independent rect. 5 2
877 113.78 temperature 20.0 30 > th dose independent rect. 7 8
878 113.78 atmosphere 1005.0 90 < th dose independent rect. 11 8
881 113.78 precipitation 0.1 270 > th dose independent rect. 21 19
900 113.80 wind 7.0 270 > th dose independent rect. 21 12
903 113.80 precipitation 0.1 270 > th dose independent rect. 5 22
904 113.80 wind 5.0 1440 < th dose dependent rect. 4 1
909 113.81 radiation 1.0 720 < th dose independent rect. 5 11
910 113.81 wind 3.0 10 > th dose dependent rect. 24 2
916 113.82 radiation 1.0 14400 > th dose independent rect. 10 1
918 113.82 wind 3.0 270 > th dose independent rect. 20 6
925 113.82 wind 7.0 270 > th dose dependent rect. 21 12
927 113.82 precipitation 0.1 270 > th dose dependent rect. 21 19
928 113.83 temperature 20.0 90 > th dose independent rect. 5 1
942 113.84 wind 9.0 1440 < th dose dependent rect. 3 2
952 113.85 atmosphere 1005.0 90 < th dose independent rect. 11 12
975 113.86 radiation 40.0 10 < th dose independent sin 13 NA
983 113.86 radiation 1.0 1440 < th dose independent rect. 1 7
994 113.86 radiation 1.0 14400 < th dose dependent rect. 7 6
999 113.87 humidity 70.0 270 < th dose independent sin 7 NA