Os11g0676800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0676800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.72 | 0.747 | 5.21 | -3.07 | 0.865 | -3.93 | 1.7 | -1.49 | -0.0415 | 5.2 | 19.7 | 6247 | -- | -- |
| 255.05 | 0.744 | 5.26 | -3.19 | 0.883 | -3.59 | 1.68 | -- | -0.0538 | 5.1 | 19.46 | 6236 | -- | -- |
| 259.1 | 0.75 | 5.22 | -3.09 | 0.859 | -3.99 | -- | -1.54 | -0.035 | 4.91 | 19.6 | 6249 | -- | -- |
| 261.71 | 0.753 | 5.27 | -3.23 | 0.874 | -3.6 | -- | -- | -0.0618 | 4.94 | 19.5 | 6242 | -- | -- |
| 292.95 | 0.797 | 5.2 | -3.24 | -- | -4.53 | -- | -2.55 | -0.0586 | -- | 19.4 | 7150 | -- | -- |
| 452.91 | 0.998 | 5.05 | -0.794 | 0.871 | -- | 1.68 | -- | 0.913 | 4.94 | -- | -- | -- | -- |
| 460.05 | 1 | 5.06 | -0.799 | 0.881 | -- | -- | -- | 0.904 | 4.75 | -- | -- | -- | -- |
| 298.07 | 0.804 | 5.28 | -3.3 | -- | -3.74 | -- | -- | -0.0309 | -- | 19.49 | 7331 | -- | -- |
| 331.49 | 0.848 | 5.16 | -- | 0.775 | -1.94 | -- | -- | 0.286 | 5.21 | 22.6 | 2097 | -- | -- |
| 501.13 | 1.05 | 5.06 | -0.766 | -- | -- | -- | -- | 0.927 | -- | -- | -- | -- | -- |
| 476.86 | 1.02 | 5.04 | -- | 0.866 | -- | -- | -- | 0.993 | 4.77 | -- | -- | -- | -- |
| 356.42 | 0.879 | 5.18 | -- | -- | -1.94 | -- | -- | 0.417 | -- | 22.36 | 1437 | -- | -- |
| 516.59 | 1.06 | 5.04 | -- | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 255.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 3 | 256.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 11 | 257.08 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 15 | 257.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 39 | 257.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 21 |
| 45 | 257.97 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 50 | 257.99 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 51 | 258.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 19 |
| 81 | 258.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 92 | 258.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 21 |
| 97 | 258.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 98 | 258.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 149 | 258.58 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 254 | 258.98 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 307 | 259.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 353 | 259.28 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 381 | 259.40 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 1 | NA |
| 382 | 259.40 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 402 | 259.45 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 409 | 259.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 6 |
| 442 | 259.59 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 449 | 259.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 471 | 259.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 508 | 259.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 539 | 259.86 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 588 | 260.04 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 671 | 260.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 681 | 260.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 5 |
| 722 | 260.37 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 747 | 260.41 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 12 | NA |
| 840 | 260.58 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 853 | 260.61 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 932 | 260.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 943 | 260.76 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 955 | 260.78 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 14 |