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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0676500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR type resistance protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.74 (0.0385) R2 : 0.87
β1 : 9.68 (0.219) R2dD : 1.42 R2D : 0.477
β2 : 0.653 (0.0995) R2dC : 0.0122 R2C : -0.0142
β3 : -1.86 (0.14) R2dE : 0.0619 R2E : 0.00746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.76 (0.623) R2dD*E : 0.189 R2D*E : -0.667
γ1 : 1.62 (0.0861) R2dN8 : 0.153 R2N8 : -0.0122
σ : 0.711
deviance : 233.3
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_____
C
peak time of C : 5.84
E
wheather : radiation
threshold : 0.4732
memory length : 4318
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 12.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.96 0.719 6.74 9.65 0.647 -1.88 -0.303 -9.77 1.61 5.88 0.6591 4318 17.1 12.9
369 0.895 6.67 8.38 1.12 -1.33 -0.462 -- 1.68 5.24 6.457 12964 16.9 13.4
233.3 0.711 6.74 9.68 0.653 -1.86 -- -9.76 1.62 5.84 0.4732 4318 17.1 12.7
357.94 0.881 6.66 7.73 1.24 -1.41 -- -- 1.77 4.21 2.603 14831 17.4 12.5
254.87 0.744 6.74 9.73 -- -1.89 -- -9.95 1.65 -- 0.5091 4320 17.3 12.7
405.34 0.944 6.77 7.06 0.75 -- -0.0505 -- 1.5 5.3 -- -- -- --
405.35 0.943 6.77 7.06 0.75 -- -- -- 1.5 5.29 -- -- -- --
296.59 0.802 6.99 5.88 -- -2.05 -- -- 0.593 -- 1.5 47520 17.2 10.2
359.64 0.883 7.15 -- 0.0492 -5.44 -- -- -0.311 10.6 0.04308 46695 9.28 8.48
434.68 0.974 6.78 7.08 -- -- -- -- 1.51 -- -- -- -- --
1717.83 1.94 6.94 -- 0.873 -- -- -- 0.71 4.98 -- -- -- --
339.48 0.858 7.17 -- -- -5.24 -- -- -0.435 -- 0.6031 47520 9.81 4.37
1757.91 1.96 6.96 -- -- -- -- -- 0.729 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.80 radiation 1 43200 < th dose dependent rect. 20 9
2 228.81 radiation 1 43200 < th dose dependent rect. 23 6
8 230.37 radiation 1 43200 < th dose dependent rect. 3 2
11 233.64 radiation 1 43200 < th dose independent rect. 18 11
12 233.87 radiation 1 43200 < th dose independent rect. 18 5
14 233.89 radiation 1 43200 < th dose independent rect. 18 1
15 233.89 radiation 1 43200 < th dose independent rect. 18 3
19 233.94 radiation 1 43200 < th dose independent rect. 18 8
22 235.84 radiation 10 43200 < th dose dependent rect. 18 5
25 235.87 radiation 10 43200 < th dose dependent rect. 18 1
62 237.13 temperature 20 14400 < th dose dependent rect. 3 5
65 237.53 radiation 1 4320 < th dose dependent rect. 17 13
67 237.84 radiation 1 43200 > th dose independent rect. 18 1
103 239.73 temperature 20 14400 < th dose dependent rect. 23 10
129 240.51 temperature 20 14400 < th dose dependent sin 6 NA
151 241.28 radiation 1 43200 < th dose dependent rect. 18 17
162 241.57 radiation 1 4320 < th dose dependent rect. 17 9
165 241.58 humidity 60 43200 > th dose independent rect. 3 6
174 241.65 humidity 90 43200 > th dose dependent rect. 3 2
175 241.65 radiation 1 4320 < th dose dependent rect. 17 2
247 242.80 radiation 1 14400 < th dose dependent rect. 14 17
248 242.81 humidity 60 43200 < th dose dependent rect. 10 2
254 242.85 radiation 1 43200 < th dose dependent rect. 7 22
256 242.89 humidity 60 43200 < th dose independent rect. 23 12
325 243.60 humidity 70 43200 < th dose dependent rect. 2 7
364 244.10 radiation 1 14400 < th dose dependent sin 11 NA
440 244.84 humidity 60 43200 < th dose dependent rect. 23 13
456 244.96 radiation 1 43200 < th dose dependent rect. 7 12
459 244.97 radiation 1 43200 < th dose dependent rect. 7 16
468 245.00 humidity 60 43200 < th dose independent rect. 8 3
504 245.19 radiation 1 14400 < th dose dependent rect. 4 15
644 245.58 radiation 1 14400 < th dose dependent no NA NA
714 246.00 temperature 20 14400 < th dose dependent rect. 23 2
868 246.56 humidity 90 43200 < th dose independent rect. 24 1
880 246.64 temperature 20 14400 < th dose dependent no NA NA
886 246.65 humidity 90 43200 > th dose dependent rect. 24 1
916 246.81 humidity 70 43200 < th dose independent rect. 7 1
981 247.08 radiation 1 14400 < th dose dependent rect. 22 12