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Os11g0674500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0471) R2 : 0.716
β1 : 5.39 (0.175) R2dD : 0.637 R2D : 0.419
β2 : 1.35 (0.118) R2dC : 0.0857 R2C : 0.0142
β3 : 2.24 (0.144) R2dE : 0.169 R2E : -0.0613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.29 (0.102) R2dN8 : 0.14 R2N8 : -0.0329
σ : 0.877
deviance : 354.23
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C
peak time of C : 2.6
E
wheather : humidity
threshold : 70.1
memory length : 1276
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.18 0.877 10.8 5.29 1.29 2.2 1.29 0.877 1.27 2.55 70 1309 -- --
349.37 0.871 10.8 5.42 1.35 2.28 1.2 -- 1.3 2.42 70.15 1274 -- --
353.62 0.876 10.8 5.28 1.35 2.21 -- 0.594 1.25 2.58 70 1278 -- --
354.23 0.877 10.8 5.39 1.35 2.24 -- -- 1.29 2.6 70.1 1276 -- --
377.42 0.905 10.8 5.15 -- 2.66 -- 1.21 1.23 -- 72.9 1722 -- --
539.54 1.09 10.8 4.9 0.944 -- 0.608 -- 0.976 2.98 -- -- -- --
540.7 1.09 10.8 4.89 0.951 -- -- -- 0.973 3.12 -- -- -- --
379.83 0.908 10.8 5.29 -- 2.71 -- -- 1.27 -- 72.6 1722 -- --
699.36 1.23 10.7 -- 0.501 4.25 -- -- 1.2 0.0333 65.02 29484 -- --
592.26 1.14 10.8 4.93 -- -- -- -- 0.997 -- -- -- -- --
1169.97 1.6 11 -- 1.05 -- -- -- 0.428 3.13 -- -- -- --
694.38 1.23 10.9 -- -- 5.09 -- -- 0.801 -- 64.94 30540 -- --
1232.53 1.64 10.9 -- -- -- -- -- 0.451 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 345.60 humidity 50 1440 > th dose dependent rect. 7 15
24 348.18 humidity 90 1440 < th dose dependent rect. 7 16
52 349.54 humidity 50 1440 > th dose dependent sin 22 NA
94 351.15 humidity 70 1440 > th dose independent rect. 16 22
96 351.24 humidity 70 1440 > th dose independent rect. 18 20
140 352.69 humidity 80 1440 < th dose dependent rect. 16 22
143 352.77 humidity 70 1440 > th dose independent rect. 13 23
157 353.03 humidity 90 1440 < th dose dependent sin 22 NA
174 353.37 humidity 70 1440 > th dose independent rect. 9 14
176 353.38 humidity 70 1440 > th dose independent rect. 9 12
182 353.41 temperature 30 1440 < th dose independent rect. 9 6
183 353.41 humidity 70 1440 > th dose independent rect. 9 18
184 353.42 humidity 70 1440 > th dose independent rect. 9 20
185 353.42 humidity 70 1440 > th dose independent rect. 9 22
221 354.01 temperature 30 1440 < th dose independent rect. 4 11
223 354.02 temperature 30 1440 < th dose independent rect. 2 13
228 354.05 temperature 30 1440 < th dose independent rect. 19 20
240 354.10 humidity 70 1440 > th dose independent rect. 4 19
243 354.11 humidity 70 1440 > th dose independent rect. 4 17
246 354.11 humidity 70 1440 > th dose independent rect. 2 21
250 354.12 humidity 70 1440 > th dose independent rect. 2 19
258 354.13 temperature 30 1440 < th dose independent rect. 22 17
268 354.13 humidity 70 1440 > th dose independent rect. 4 23
291 354.16 humidity 70 1440 > th dose independent rect. 22 23
294 354.17 humidity 70 1440 > th dose independent no NA NA
332 354.40 temperature 30 1440 < th dose independent sin 2 NA
343 354.59 temperature 30 1440 > th dose independent rect. 9 6
417 355.20 radiation 30 1440 > th dose independent rect. 15 18
420 355.24 temperature 30 1440 < th dose independent rect. 9 14
421 355.26 temperature 30 1440 < th dose independent rect. 9 12
423 355.26 temperature 30 1440 < th dose independent rect. 9 23
438 355.34 temperature 30 1440 < th dose independent rect. 9 18
500 355.48 temperature 30 1440 < th dose independent rect. 4 19
504 355.49 temperature 30 1440 < th dose independent rect. 2 21
506 355.50 temperature 30 1440 < th dose independent rect. 4 17
519 355.52 temperature 30 1440 > th dose independent sin 1 NA
561 355.58 temperature 30 1440 < th dose independent rect. 22 23
564 355.59 temperature 30 1440 < th dose independent no NA NA
623 355.74 temperature 30 1440 < th dose independent rect. 13 23
662 355.91 radiation 30 1440 < th dose independent rect. 15 18
720 356.10 humidity 90 1440 < th dose dependent no NA NA
742 356.28 humidity 60 1440 > th dose dependent rect. 11 2
746 356.30 temperature 30 1440 > th dose independent no NA NA
842 356.35 humidity 70 1440 < th dose independent rect. 15 22
845 356.36 humidity 80 1440 < th dose dependent rect. 13 23
850 356.40 temperature 30 1440 > th dose independent rect. 13 23
867 356.61 temperature 30 1440 > th dose independent rect. 11 23
908 356.84 humidity 80 1440 < th dose dependent rect. 10 23
925 356.98 humidity 80 1440 < th dose dependent rect. 20 23
959 357.11 humidity 70 1440 < th dose independent rect. 9 11
985 357.28 humidity 60 1440 > th dose dependent rect. 10 4