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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0673900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR type resistance protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0352) R2 : 0.572
β1 : -2.46 (0.15) R2dD : 0.38 R2D : 0.0199
β2 : 0.659 (0.0862) R2dC : 0.0549 R2C : 0.0656
β3 : -2.79 (0.166) R2dE : 0.44 R2E : 0.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0834) R2dN8 : 0.00621 R2N8 : 0.054
σ : 0.635
deviance : 185.63
__
_____
C
peak time of C : 3.89
E
wheather : temperature
threshold : 26.67
memory length : 5868
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.93 0.632 5.3 -2.35 0.638 -2.92 1.23 -0.672 0.185 3.78 25.86 5811 -- --
181.22 0.627 5.32 -2.43 0.641 -2.78 1.27 -- 0.172 3.76 26.51 5800 -- --
185.26 0.634 5.3 -2.35 0.654 -3.02 -- -1 0.173 3.87 25.29 5874 -- --
185.63 0.635 5.33 -2.46 0.659 -2.79 -- -- 0.161 3.89 26.67 5868 -- --
207.07 0.67 5.3 -2.28 -- -3.04 -- -1.1 0.205 -- 25.53 5579 -- --
295.33 0.806 5.17 -1.02 0.709 -- 1.25 -- 0.862 3.63 -- -- -- --
300.05 0.811 5.17 -1.04 0.718 -- -- -- 0.855 3.77 -- -- -- --
206.23 0.669 5.3 -2.3 -- -2.7 -- -- 0.31 -- 35.22 5516 -- --
274.29 0.771 5.2 -- 0.58 -1.67 -- -- 0.725 4.03 38.43 1382 -- --
328.52 0.847 5.17 -1.01 -- -- -- -- 0.874 -- -- -- -- --
328.69 0.848 5.14 -- 0.698 -- -- -- 0.971 3.79 -- -- -- --
290.13 0.793 5.21 -- -- -1.83 -- -- 0.718 -- 49.42 1254 -- --
355.57 0.88 5.14 -- -- -- -- -- 0.986 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.72 wind 9 14400 < th dose independent rect. 16 1
2 180.57 temperature 25 4320 < th dose dependent rect. 6 1
4 181.64 wind 9 43200 > th dose independent rect. 14 16
6 181.98 temperature 15 1440 > th dose dependent rect. 16 1
8 182.01 wind 9 43200 > th dose independent rect. 12 19
10 182.11 wind 9 43200 > th dose dependent rect. 11 20
11 182.22 wind 9 14400 > th dose dependent rect. 16 1
13 182.35 wind 9 43200 < th dose independent rect. 14 15
16 182.41 temperature 10 4320 > th dose dependent rect. 5 2
24 182.85 wind 9 43200 < th dose independent rect. 11 21
25 182.88 wind 9 43200 < th dose independent rect. 12 19
33 183.16 wind 9 43200 > th dose dependent rect. 14 16
37 183.22 wind 9 43200 > th dose independent sin 15 NA
47 183.46 temperature 15 1440 > th dose dependent rect. 11 7
73 183.84 wind 9 43200 < th dose independent sin 15 NA
82 183.98 wind 7 43200 > th dose dependent sin 16 NA
107 184.22 wind 9 43200 > th dose independent rect. 10 19
126 184.42 wind 9 43200 < th dose independent rect. 10 19
129 184.49 humidity 60 43200 < th dose dependent rect. 23 13
190 185.05 wind 7 43200 > th dose dependent rect. 15 4
208 185.17 wind 7 43200 > th dose dependent rect. 14 10
212 185.21 humidity 70 43200 < th dose independent rect. 1 8
219 185.30 wind 9 43200 > th dose independent sin 19 NA
240 185.45 temperature 30 1440 < th dose dependent rect. 16 1
269 185.68 wind 9 43200 < th dose independent sin 19 NA
287 185.94 humidity 60 43200 < th dose dependent rect. 9 2
327 186.16 radiation 1 43200 > th dose independent rect. 18 11
379 186.45 temperature 30 1440 < th dose dependent rect. 11 9
388 186.49 wind 7 43200 > th dose dependent rect. 10 14
392 186.50 temperature 25 4320 < th dose dependent rect. 24 14
395 186.53 temperature 25 4320 < th dose dependent sin 6 NA
434 186.73 wind 7 43200 > th dose independent rect. 17 1
445 186.76 temperature 10 1440 > th dose dependent sin 21 NA
450 186.77 temperature 30 1440 < th dose dependent rect. 14 5
491 186.91 radiation 1 43200 > th dose independent rect. 17 2
510 186.94 humidity 60 43200 < th dose independent rect. 23 12
520 186.97 wind 9 43200 < th dose independent rect. 9 14
532 187.01 radiation 1 43200 < th dose independent rect. 17 12
632 187.36 wind 7 43200 > th dose independent rect. 3 19
645 187.40 wind 7 43200 > th dose independent rect. 8 16
656 187.42 wind 9 43200 < th dose independent rect. 14 10
673 187.46 wind 9 43200 < th dose independent rect. 9 9
682 187.48 radiation 1 43200 < th dose independent rect. 17 2
686 187.49 radiation 1 43200 < th dose independent rect. 17 4
688 187.49 radiation 1 43200 < th dose independent rect. 17 10
721 187.59 temperature 10 43200 > th dose dependent rect. 5 1
758 187.68 temperature 10 4320 > th dose dependent sin 7 NA
762 187.69 wind 9 43200 > th dose independent rect. 9 14
811 187.80 wind 7 43200 < th dose independent rect. 3 20
833 187.84 temperature 10 1440 > th dose dependent rect. 12 1
845 187.86 wind 7 43200 < th dose independent rect. 8 16
902 187.98 radiation 1 1440 > th dose independent rect. 8 22
912 187.99 temperature 25 4320 < th dose dependent rect. 13 19
916 188.01 wind 9 43200 > th dose independent rect. 9 10
920 188.01 radiation 1 1440 < th dose independent rect. 8 22
966 188.09 temperature 10 4320 > th dose dependent rect. 14 18