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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0673200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xylosidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.0408) R2 : 0.533
β1 : -1.38 (0.152) R2dD : 0.0947 R2D : 0.00285
β2 : 1.96 (0.1) R2dC : 0.424 R2C : 0.242
β3 : 1.54 (0.103) R2dE : 0.295 R2E : 0.00957
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.287 (0.0916) R2dN8 : 0.0156 R2N8 : -0.0392
σ : 0.746
deviance : 256.55
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_____
C
peak time of C : 22
E
wheather : temperature
threshold : 20.54
memory length : 1195
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 7.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.96 0.752 4.98 -1.4 1.95 1.54 -0.427 0.0165 -0.29 22 20.6 1206 22.9 7.9
255.83 0.745 4.98 -1.4 1.95 1.54 -0.436 -- -0.289 22 20.53 1199 23 8
256.54 0.746 4.98 -1.38 1.96 1.53 -- 0.0729 -0.283 22 20.52 1197 23 8
256.55 0.746 4.98 -1.38 1.96 1.54 -- -- -0.287 22 20.54 1195 23 7.98
415.79 0.95 4.94 -1.31 -- 1.46 -- 0.531 -0.204 -- 21.21 1357 1.18 8.16
377.07 0.91 4.86 -0.741 1.61 -- -0.327 -- 0.224 21.2 -- -- -- --
377.44 0.91 4.86 -0.728 1.62 -- -- -- 0.224 21.2 -- -- -- --
403.9 0.936 4.91 -1.24 -- 1.52 -- -- -0.201 -- 21.81 1297 2.53 8.75
301.21 0.808 4.95 -- 2.06 1.41 -- -- -0.177 22 21.6 1126 23.3 8.33
528.98 1.07 4.81 -0.723 -- -- -- -- 0.216 -- -- -- -- --
391.42 0.925 4.84 -- 1.62 -- -- -- 0.305 21.2 -- -- -- --
355.49 0.878 4.88 -- -- 2.32 -- -- -0.0888 -- 22.68 1006 5.59 12.6
542.76 1.09 4.79 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.00 temperature 10 720 > th dose dependent rect. 21 18
2 265.20 temperature 10 720 > th dose dependent rect. 21 20
9 266.89 temperature 10 720 > th dose dependent sin 6 NA
12 267.14 temperature 10 720 > th dose dependent rect. 21 14
26 268.41 temperature 30 720 < th dose dependent sin 7 NA
33 268.80 temperature 30 720 < th dose dependent rect. 22 15
63 270.79 temperature 30 720 < th dose dependent rect. 23 12
105 272.82 temperature 20 720 > th dose dependent rect. 3 6
116 273.36 temperature 10 720 > th dose dependent rect. 23 10
120 273.56 temperature 20 720 > th dose dependent rect. 1 8
168 275.13 temperature 30 720 < th dose dependent rect. 17 19
188 275.95 temperature 25 720 < th dose dependent rect. 1 22
200 276.36 temperature 25 720 < th dose dependent rect. 21 23
206 276.47 temperature 25 720 < th dose dependent rect. 15 22
231 276.92 temperature 25 720 < th dose dependent no NA NA
238 277.00 temperature 25 720 < th dose dependent rect. 6 23
239 277.04 temperature 25 720 < th dose dependent rect. 19 23
247 277.15 temperature 25 720 < th dose dependent rect. 3 23
260 277.40 temperature 10 720 > th dose dependent rect. 1 8
268 277.55 temperature 10 270 > th dose dependent rect. 12 23
271 277.58 temperature 15 270 > th dose dependent rect. 3 16
281 277.75 temperature 25 720 < th dose dependent rect. 8 23
313 278.23 temperature 25 1440 < th dose dependent rect. 21 2
378 279.34 temperature 25 1440 < th dose dependent rect. 19 11
441 279.98 temperature 30 1440 < th dose dependent rect. 3 2
506 280.41 temperature 15 1440 > th dose dependent rect. 3 2
583 281.21 temperature 30 1440 < th dose dependent rect. 1 5
587 281.23 temperature 15 1440 > th dose dependent rect. 23 7
609 281.37 temperature 10 270 > th dose dependent rect. 1 23
622 281.44 temperature 20 1440 > th dose independent rect. 20 10
625 281.47 temperature 15 1440 > th dose dependent rect. 1 5
805 282.59 temperature 20 1440 < th dose independent rect. 20 10