Os11g0673000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os11g0673000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.14 | 0.456 | 3.91 | -0.00471 | 1.2 | 0.983 | -0.0256 | -1.47 | 0.133 | 21.3 | 78.8 | 1358 | -- | -- |
| 95.81 | 0.456 | 3.92 | -0.133 | 1.19 | 0.919 | -0.0849 | -- | 0.115 | 21.3 | 81 | 1357 | -- | -- |
| 94.14 | 0.452 | 3.91 | -0.00391 | 1.2 | 0.983 | -- | -1.46 | 0.133 | 21.3 | 78.84 | 1355 | -- | -- |
| 95.73 | 0.456 | 3.91 | -0.15 | 1.21 | 0.885 | -- | -- | 0.118 | 21.3 | 80.82 | 1347 | -- | -- |
| 175.53 | 0.617 | 3.88 | -0.00302 | -- | 1.11 | -- | -1.43 | 0.125 | -- | 78.67 | 1449 | -- | -- |
| 105.84 | 0.482 | 3.92 | -0.171 | 1.21 | -- | -0.0684 | -- | 0.0644 | 21.1 | -- | -- | -- | -- |
| 105.85 | 0.482 | 3.92 | -0.168 | 1.21 | -- | -- | -- | 0.0644 | 21.1 | -- | -- | -- | -- |
| 177.62 | 0.621 | 3.88 | -0.151 | -- | 1.02 | -- | -- | 0.117 | -- | 81 | 1460 | -- | -- |
| 96.32 | 0.457 | 3.91 | -- | 1.21 | 0.891 | -- | -- | 0.133 | 21.3 | 80 | 1347 | -- | -- |
| 190.19 | 0.644 | 3.89 | -0.165 | -- | -- | -- | -- | 0.0577 | -- | -- | -- | -- | -- |
| 106.6 | 0.483 | 3.92 | -- | 1.21 | -- | -- | -- | 0.0832 | 21.1 | -- | -- | -- | -- |
| 178.21 | 0.622 | 3.87 | -- | -- | 1.03 | -- | -- | 0.132 | -- | 80.21 | 1460 | -- | -- |
| 190.91 | 0.645 | 3.89 | -- | -- | -- | -- | -- | 0.0761 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 3 | 92.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 5 | 92.87 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 6 | 92.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 24 | 93.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 28 | 93.20 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 31 | 93.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 35 | 93.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 45 | 93.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 50 | 93.35 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 74 | 93.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 95 | 93.65 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 7 |
| 154 | 93.89 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 13 |
| 162 | 93.92 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 188 | 94.02 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 231 | 94.19 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 252 | 94.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 303 | 94.41 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 332 | 94.50 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 336 | 94.51 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 342 | 94.53 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 350 | 94.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 374 | 94.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 375 | 94.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 387 | 94.66 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 415 | 94.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 419 | 94.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 427 | 94.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 428 | 94.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 439 | 94.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 447 | 94.79 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 465 | 94.82 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 494 | 94.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 495 | 94.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 496 | 94.86 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 501 | 94.87 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 514 | 94.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 515 | 94.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 675 | 95.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 715 | 95.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 791 | 95.39 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 795 | 95.40 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 810 | 95.41 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 827 | 95.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 949 | 95.64 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 976 | 95.71 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |