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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0671100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0263) R2 : 0.21
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.737 (0.0682) R2dC : 0.204 R2C : 0.199
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.124 (0.0552) R2dN8 : 0.0114 R2N8 : 0.00594
σ : 0.495
deviance : 111.98
__
_____
C
peak time of C : 19.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.06 0.451 3.05 0.308 0.977 0.864 1.36 1.04 0.162 15 16.32 7 -- --
95.16 0.454 3.05 0.286 0.98 0.86 0.426 -- 0.164 15 13.86 5 -- --
95.6 0.455 3.03 0.309 1.03 0.879 -- 0.45 0.171 14.8 13.33 6 -- --
95.67 0.456 3.05 0.292 1.03 0.926 -- -- 0.167 14.7 13.45 5 -- --
126.26 0.526 3.05 0.273 -- 0.359 -- 0.293 0.144 -- 12.94 5 -- --
106.5 0.484 3.07 0.305 0.738 -- 1.13 -- 0.153 19.1 -- -- -- --
109.87 0.491 3.07 0.283 0.74 -- -- -- 0.156 19.1 -- -- -- --
126.77 0.527 3.05 0.265 -- 0.36 -- -- 0.144 -- 12.94 5 -- --
97.92 0.461 3.05 -- 1.03 0.926 -- -- 0.14 14.6 13.03 5 -- --
138.8 0.551 3.05 0.269 -- -- -- -- 0.143 -- -- -- -- --
111.98 0.495 3.08 -- 0.737 -- -- -- 0.124 19.2 -- -- -- --
128.51 0.53 3.06 -- -- 0.357 -- -- 0.115 -- 11.31 3 -- --
140.71 0.554 3.06 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.74 radiation 10.0 10 < th dose dependent rect. 7 13
2 85.08 radiation 10.0 90 < th dose dependent rect. 12 7
3 85.09 radiation 20.0 10 < th dose dependent rect. 12 8
7 85.18 radiation 10.0 10 < th dose dependent rect. 10 10
19 85.91 atmosphere 1005.0 90 > th dose independent rect. 15 4
20 85.91 radiation 10.0 90 < th dose dependent rect. 7 12
21 86.03 radiation 10.0 10 < th dose independent rect. 13 7
29 86.67 radiation 10.0 90 < th dose independent rect. 13 6
51 87.64 humidity 50.0 90 > th dose independent rect. 15 4
53 87.64 radiation 10.0 10 < th dose dependent sin 22 NA
56 87.68 radiation 10.0 10 < th dose independent rect. 10 10
67 87.89 atmosphere 1005.0 10 > th dose independent rect. 15 5
81 88.20 humidity 50.0 10 > th dose dependent rect. 14 6
86 88.32 humidity 50.0 90 > th dose dependent rect. 15 4
105 88.77 radiation 10.0 10 < th dose independent rect. 7 13
133 89.22 atmosphere 1000.0 90 > th dose dependent rect. 15 4
137 89.27 atmosphere 995.0 10 > th dose dependent rect. 15 5
159 89.61 humidity 60.0 10 > th dose independent rect. 15 5
164 89.69 radiation 30.0 270 < th dose independent rect. 14 3
175 89.99 temperature 30.0 90 < th dose independent rect. 15 4
178 89.99 radiation 20.0 10 < th dose dependent rect. 1 19
179 89.99 radiation 20.0 10 < th dose dependent rect. 21 23
193 90.14 radiation 20.0 10 < th dose dependent rect. 23 21
201 90.27 atmosphere 995.0 270 > th dose dependent rect. 15 2
222 90.51 radiation 10.0 90 < th dose independent rect. 7 12
248 90.67 precipitation 0.1 270 < th dose independent rect. 17 22
250 90.67 precipitation 0.1 270 < th dose dependent rect. 17 22
270 90.87 radiation 20.0 90 < th dose dependent rect. 1 18
281 91.00 humidity 50.0 10 > th dose dependent rect. 1 19
285 91.03 atmosphere 995.0 270 > th dose independent rect. 15 2
303 91.13 radiation 10.0 10 < th dose independent rect. 1 19
318 91.21 radiation 20.0 10 < th dose dependent rect. 13 20
350 91.41 atmosphere 995.0 10 > th dose independent rect. 15 5
379 91.64 radiation 10.0 90 < th dose independent rect. 1 18
398 91.75 humidity 80.0 720 < th dose independent rect. 11 3
408 91.78 radiation 1.0 10 < th dose independent sin 23 NA
430 91.87 radiation 1.0 10 > th dose independent sin 23 NA
456 91.97 radiation 10.0 10 < th dose independent rect. 23 21
457 91.98 atmosphere 1005.0 270 > th dose independent rect. 15 1
505 92.23 radiation 40.0 270 < th dose dependent rect. 15 2
509 92.25 wind 5.0 30 < th dose independent rect. 14 6
529 92.33 wind 9.0 270 < th dose independent rect. 15 2
551 92.42 radiation 10.0 10 > th dose independent sin 21 NA
558 92.43 wind 1.0 270 > th dose independent rect. 15 2
559 92.43 temperature 10.0 270 > th dose independent rect. 15 2
561 92.43 atmosphere 1010.0 270 < th dose independent rect. 15 2
568 92.43 temperature 10.0 270 > th dose independent rect. 17 22
575 92.44 radiation 20.0 10 < th dose dependent rect. 10 23
582 92.49 radiation 10.0 90 < th dose independent rect. 23 21
600 92.53 radiation 20.0 10 < th dose dependent rect. 1 23
613 92.58 precipitation 0.1 10 < th dose independent rect. 16 4
615 92.58 precipitation 0.1 10 < th dose dependent rect. 16 4
659 92.70 wind 9.0 90 < th dose dependent rect. 15 4
661 92.71 radiation 10.0 10 < th dose independent sin 21 NA
666 92.72 wind 9.0 270 < th dose independent rect. 17 22
686 92.78 radiation 20.0 10 < th dose dependent rect. 15 23
697 92.81 radiation 20.0 10 < th dose dependent no NA NA
715 92.89 humidity 60.0 90 > th dose independent rect. 1 18
753 93.02 precipitation 0.1 270 < th dose independent rect. 15 2
755 93.02 precipitation 0.1 270 < th dose dependent rect. 15 2
772 93.09 temperature 10.0 1440 > th dose independent rect. 17 4
775 93.09 radiation 30.0 1440 < th dose independent rect. 17 4
781 93.09 temperature 10.0 1440 > th dose independent rect. 21 20
785 93.09 radiation 30.0 90 < th dose dependent rect. 13 20
816 93.16 temperature 10.0 10 > th dose independent rect. 16 4
818 93.16 atmosphere 1010.0 10 < th dose independent rect. 16 4
823 93.16 temperature 10.0 10 > th dose independent rect. 20 20
824 93.16 precipitation 0.1 10 < th dose independent rect. 20 20
826 93.16 precipitation 0.1 10 < th dose dependent rect. 20 20
838 93.19 wind 9.0 10 < th dose independent rect. 15 5
847 93.22 temperature 20.0 90 > th dose independent rect. 15 5
861 93.23 atmosphere 995.0 10 > th dose independent rect. 20 19
875 93.29 temperature 10.0 90 > th dose independent rect. 15 5
877 93.29 atmosphere 1010.0 90 < th dose independent rect. 15 5
879 93.29 temperature 10.0 90 > th dose independent rect. 20 19
905 93.33 wind 9.0 10 < th dose independent rect. 20 19
929 93.37 atmosphere 995.0 270 > th dose independent rect. 18 20
935 93.38 wind 9.0 90 < th dose independent rect. 20 19
987 93.46 wind 1.0 10 > th dose independent rect. 15 5
991 93.47 wind 1.0 90 > th dose independent rect. 15 5
1000 93.48 humidity 90.0 30 < th dose independent rect. 20 20