Os11g0670900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0670900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.86 | 0.838 | 10 | -1.08 | 8.55 | -10.8 | 3.26 | -0.517 | -0.26 | 6.73 | 0.8253 | 731 | 7.02 | 21 |
| 317.4 | 0.83 | 10.1 | -1.07 | 8.42 | -10.6 | 2.83 | -- | -0.259 | 6.79 | 0.83 | 735 | 7 | 21 |
| 327.42 | 0.843 | 10 | -1.03 | 8.29 | -10.5 | -- | 2.41 | -0.239 | 6.79 | 0.86 | 739 | 6.95 | 21 |
| 336.9 | 0.855 | 10.1 | -0.999 | 8.41 | -10.6 | -- | -- | -0.252 | 6.88 | 0.8501 | 747 | 6.94 | 21 |
| 753.68 | 1.29 | 10.2 | -0.625 | -- | -2.51 | -- | -0.262 | 0.0451 | -- | 0.86 | 739 | 6.95 | 21 |
| 490.28 | 1.04 | 10.1 | -0.435 | 3.85 | -- | 0.00205 | -- | 0.0737 | 11.8 | -- | -- | -- | -- |
| 490.28 | 1.04 | 10.1 | -0.435 | 3.85 | -- | -- | -- | 0.0738 | 11.8 | -- | -- | -- | -- |
| 477.15 | 1.02 | 10.2 | -0.321 | -- | -3.06 | -- | -- | -0.0488 | -- | 86.66 | 763 | 7.35 | 20.6 |
| 362.03 | 0.886 | 10 | -- | 8.31 | -10.4 | -- | -- | -0.163 | 6.92 | 0.9301 | 746 | 7.03 | 21 |
| 1423.57 | 1.76 | 10.2 | -0.548 | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
| 495.28 | 1.04 | 10.1 | -- | 3.86 | -- | -- | -- | 0.122 | 11.8 | -- | -- | -- | -- |
| 476.31 | 1.02 | 10.2 | -- | -- | -3.31 | -- | -- | 0.0065 | -- | 132.2 | 777 | 7.36 | 20.2 |
| 1431.5 | 1.77 | 10.2 | -- | -- | -- | -- | -- | 0.0859 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 321.76 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 21 |
| 2 | 323.06 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 4 | 326.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 7 | 328.08 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 13 | 331.57 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 13 |
| 14 | 331.78 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 11 |
| 16 | 332.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 23 | 334.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 27 | 334.96 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 29 | 335.54 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 31 | 335.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 41 | 337.04 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 47 | 337.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 48 | 338.00 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 52 | 338.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 58 | 339.47 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 79 | 343.56 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 89 | 345.26 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 115 | 349.29 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 120 | 349.90 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 126 | 350.70 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 132 | 351.27 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 133 | 351.38 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 142 | 352.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 148 | 352.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 170 | 354.34 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 190 | 355.39 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 23 |
| 216 | 356.28 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 220 | 356.39 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 242 | 357.29 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 255 | 357.38 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 286 | 358.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 297 | 358.40 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 325 | 358.97 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 353 | 359.31 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 421 | 360.75 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 508 | 362.51 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 559 | 363.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 561 | 363.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 583 | 363.87 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 601 | 364.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 713 | 366.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 716 | 366.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 730 | 366.50 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 751 | 366.68 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 762 | 366.82 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 769 | 366.91 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 781 | 367.05 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 845 | 367.57 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 856 | 367.63 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 916 | 367.94 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 919 | 367.99 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 923 | 368.07 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 962 | 368.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 965 | 368.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 12 |
| 970 | 368.56 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |