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Os11g0669100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calmodulin binding protein-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.44 (0.0388) R2 : 0.711
β1 : 1.01 (0.172) R2dD : 0.0349 R2D : 0.148
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.27 (0.201) R2dE : 0.475 R2E : 0.656
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.486 (0.0895) R2dN8 : 0.0309 R2N8 : 0.0701
σ : 0.707
deviance : 230.38
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C
peak time of C : --
E
wheather : temperature
threshold : 18.58
memory length : 3747
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.04 0.703 7.56 0.737 0.357 -3.11 0.0474 2.67 0.349 23.1 19.6 3900 -- --
228.6 0.704 7.5 1.12 0.412 -3.95 0.264 -- 0.632 22.9 18.5 3751 -- --
221.34 0.693 7.52 1.02 0.416 -2.79 -- 2.96 0.419 22.9 19.6 2665 -- --
223.56 0.696 7.44 1.05 0.332 -4.19 -- -- 0.519 23.8 18.6 3747 -- --
226.53 0.701 7.52 1.01 -- -2.84 -- 2.93 0.441 -- 19.6 2509 -- --
443.4 0.987 7.26 3.14 0.473 -- -0.238 -- 1.3 0.0444 -- -- -- --
443.61 0.986 7.26 3.15 0.475 -- -- -- 1.3 23.8 -- -- -- --
230.38 0.707 7.44 1.01 -- -4.27 -- -- 0.486 -- 18.58 3747 -- --
237.26 0.717 7.45 -- 0.473 -4.57 -- -- 0.373 0.0878 18.66 7975 -- --
457.8 1 7.25 3.17 -- -- -- -- 1.31 -- -- -- -- --
705.74 1.24 7.34 -- 0.516 -- -- -- 0.95 0.19 -- -- -- --
244.74 0.729 7.47 -- -- -4.43 -- -- 0.314 -- 18.44 9663 -- --
722.5 1.25 7.33 -- -- -- -- -- 0.955 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.00 temperature 20 4320 > th dose independent rect. 18 5
3 220.47 temperature 20 4320 < th dose independent rect. 18 5
45 229.85 temperature 20 4320 < th dose dependent rect. 22 2
55 231.13 temperature 20 4320 > th dose independent sin 15 NA
61 231.40 humidity 60 43200 < th dose independent rect. 8 1
63 231.60 temperature 20 4320 < th dose independent sin 15 NA
87 232.77 humidity 60 43200 < th dose dependent rect. 8 1
96 233.29 humidity 60 43200 < th dose dependent rect. 19 15
112 233.93 humidity 60 43200 < th dose independent rect. 20 13
130 234.81 humidity 60 43200 > th dose independent rect. 8 1
140 235.23 temperature 20 4320 < th dose independent rect. 16 19
143 235.29 radiation 30 4320 < th dose independent rect. 16 16
145 235.34 humidity 70 43200 < th dose independent rect. 19 1
161 235.71 temperature 20 4320 > th dose independent rect. 16 20
167 235.88 temperature 20 4320 < th dose independent rect. 22 1
170 235.97 humidity 80 43200 < th dose dependent rect. 17 7
183 236.26 temperature 20 4320 < th dose independent rect. 9 22
186 236.30 humidity 80 43200 < th dose dependent rect. 18 4
195 236.41 humidity 50 43200 > th dose independent rect. 19 17
201 236.46 temperature 20 4320 > th dose independent rect. 9 22
223 236.74 humidity 60 43200 > th dose independent rect. 20 13
227 236.79 humidity 70 43200 > th dose independent rect. 18 5
237 236.90 humidity 70 43200 < th dose independent rect. 16 9
245 236.94 humidity 70 43200 > th dose independent rect. 17 7
255 237.00 temperature 20 4320 < th dose dependent sin 11 NA
257 237.01 humidity 70 43200 < th dose independent rect. 17 7
268 237.07 temperature 20 4320 < th dose independent rect. 5 23
272 237.11 temperature 20 4320 < th dose independent rect. 9 19
279 237.14 temperature 20 4320 > th dose independent rect. 5 23
286 237.17 wind 3 43200 < th dose dependent rect. 20 4
297 237.30 temperature 20 4320 < th dose independent rect. 2 22
312 237.38 humidity 90 43200 < th dose dependent rect. 20 1
338 237.53 temperature 20 4320 > th dose independent rect. 2 22
341 237.57 humidity 70 43200 < th dose independent rect. 18 5
345 237.58 wind 3 43200 < th dose independent rect. 10 2
353 237.64 humidity 50 43200 > th dose independent sin 8 NA
359 237.68 humidity 70 43200 < th dose independent rect. 15 18
369 237.73 humidity 70 43200 < th dose independent sin 14 NA
389 237.92 humidity 50 43200 < th dose independent rect. 19 17
406 238.02 humidity 50 43200 < th dose dependent rect. 8 6
418 238.13 temperature 20 4320 < th dose independent no NA NA
420 238.14 humidity 50 43200 < th dose independent sin 8 NA
435 238.27 temperature 20 4320 > th dose independent no NA NA
444 238.31 humidity 70 43200 > th dose independent rect. 15 18
467 238.47 humidity 50 43200 < th dose dependent rect. 19 19
473 238.49 humidity 70 43200 > th dose independent sin 14 NA
500 238.58 temperature 20 4320 < th dose independent rect. 21 23
545 238.76 humidity 50 43200 > th dose dependent rect. 19 3
554 238.81 temperature 20 4320 > th dose independent rect. 21 23
572 238.85 wind 3 43200 < th dose independent rect. 10 4
595 238.99 humidity 50 43200 < th dose dependent rect. 13 1
602 239.01 humidity 50 43200 > th dose dependent rect. 20 1
605 239.05 atmosphere 1015 43200 < th dose independent rect. 6 1
628 239.18 humidity 80 43200 < th dose dependent sin 15 NA
637 239.23 wind 3 43200 > th dose independent rect. 10 2
640 239.25 humidity 50 43200 < th dose dependent sin 5 NA
643 239.27 humidity 70 43200 > th dose independent rect. 19 1
650 239.31 atmosphere 1015 43200 > th dose independent rect. 6 1
678 239.45 humidity 80 43200 < th dose dependent rect. 15 18
699 239.57 atmosphere 1015 43200 < th dose independent rect. 13 9
728 239.73 wind 3 43200 < th dose dependent rect. 10 2
748 239.85 atmosphere 1015 43200 > th dose independent rect. 12 11
750 239.85 atmosphere 1015 43200 < th dose independent rect. 5 16
767 239.90 atmosphere 1015 43200 < th dose independent rect. 16 5
839 240.11 wind 3 43200 > th dose independent rect. 10 4
856 240.18 atmosphere 1015 43200 < th dose independent rect. 12 21
865 240.21 humidity 60 43200 < th dose dependent rect. 2 7
866 240.22 humidity 50 43200 > th dose independent rect. 4 8
887 240.29 humidity 60 43200 < th dose independent rect. 2 7
900 240.35 humidity 50 43200 > th dose independent rect. 2 10
904 240.36 humidity 50 43200 < th dose dependent rect. 8 14
948 240.44 atmosphere 1015 43200 > th dose independent rect. 5 17
951 240.45 humidity 50 43200 < th dose dependent rect. 13 23
952 240.46 humidity 50 43200 < th dose independent rect. 5 7
962 240.47 temperature 20 4320 < th dose dependent rect. 3 1
974 240.50 atmosphere 1015 43200 > th dose independent rect. 15 7