Os11g0668300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0668300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.13 | 0.651 | 3.57 | -0.2 | 0.405 | -1.09 | 0.203 | 2.8 | 0.389 | 11.1 | 1.2 | 1614 | -- | -- |
| 203.23 | 0.664 | 3.5 | -0.0654 | 0.389 | -0.959 | -0.0997 | -- | 0.383 | 10.8 | 1.279 | 2048 | -- | -- |
| 192.29 | 0.646 | 3.57 | -0.19 | 0.408 | -1.09 | -- | 2.78 | 0.388 | 11 | 1.213 | 1607 | -- | -- |
| 203.26 | 0.664 | 3.5 | -0.07 | 0.39 | -0.964 | -- | -- | 0.383 | 10.9 | 1.277 | 2048 | -- | -- |
| 202.46 | 0.663 | 3.58 | -0.212 | -- | -1.14 | -- | 2.98 | 0.401 | -- | 1.238 | 1614 | -- | -- |
| 218.29 | 0.693 | 3.55 | 0.225 | 0.487 | -- | -0.296 | -- | 0.16 | 9.91 | -- | -- | -- | -- |
| 218.61 | 0.692 | 3.55 | 0.215 | 0.487 | -- | -- | -- | 0.16 | 10.1 | -- | -- | -- | -- |
| 212.44 | 0.679 | 3.51 | -0.112 | -- | -1.08 | -- | -- | 0.409 | -- | 1.3 | 2060 | -- | -- |
| 203.38 | 0.664 | 3.5 | -- | 0.392 | -0.939 | -- | -- | 0.383 | 10.9 | 1.259 | 2048 | -- | -- |
| 232.93 | 0.713 | 3.56 | 0.208 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 219.83 | 0.694 | 3.56 | -- | 0.486 | -- | -- | -- | 0.136 | 10 | -- | -- | -- | -- |
| 212.75 | 0.679 | 3.51 | -- | -- | -1.03 | -- | -- | 0.408 | -- | 1.245 | 2060 | -- | -- |
| 234.08 | 0.714 | 3.57 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.67 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 3 | 189.80 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 7 | 190.60 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 26 | 192.85 | wind | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 30 | 192.95 | radiation | 30 | 720 | > th | dose independent | rect. | 7 | 1 |
| 51 | 193.37 | wind | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 59 | 193.80 | wind | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 69 | 194.21 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 76 | 194.40 | wind | 1 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 96 | 194.76 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 115 | 194.85 | wind | 1 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 119 | 194.88 | radiation | 30 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 120 | 194.90 | wind | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 133 | 195.04 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 135 | 195.05 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 158 | 195.24 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 161 | 195.28 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 164 | 195.30 | wind | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 180 | 195.53 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 185 | 195.62 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 188 | 195.67 | wind | 1 | 1440 | > th | dose independent | no | NA | NA |
| 206 | 195.98 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 216 | 196.05 | wind | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 231 | 196.23 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 235 | 196.27 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 244 | 196.33 | wind | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 245 | 196.37 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 251 | 196.43 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 255 | 196.49 | wind | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 256 | 196.49 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 258 | 196.53 | wind | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 263 | 196.57 | radiation | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 266 | 196.60 | wind | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 271 | 196.66 | wind | 1 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 276 | 196.69 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 278 | 196.73 | wind | 1 | 1440 | < th | dose independent | no | NA | NA |
| 286 | 196.81 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 290 | 196.82 | wind | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 301 | 196.91 | wind | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 306 | 196.94 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 311 | 196.98 | wind | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 314 | 197.00 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 326 | 197.06 | wind | 1 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 334 | 197.09 | wind | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 339 | 197.13 | wind | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 345 | 197.15 | wind | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 412 | 197.54 | radiation | 40 | 720 | < th | dose independent | rect. | 3 | 8 |
| 424 | 197.56 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 440 | 197.64 | wind | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 501 | 197.79 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 506 | 197.80 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 16 |
| 509 | 197.81 | radiation | 40 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 530 | 197.83 | wind | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 546 | 197.93 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 561 | 198.02 | radiation | 40 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 566 | 198.03 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 741 | 198.80 | radiation | 40 | 720 | < th | dose independent | sin | 11 | NA |
| 805 | 199.04 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 827 | 199.06 | wind | 3 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 838 | 199.13 | wind | 1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 841 | 199.15 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 22 |
| 852 | 199.21 | radiation | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 914 | 199.42 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 933 | 199.50 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 967 | 199.72 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 987 | 199.81 | wind | 3 | 1440 | < th | dose dependent | rect. | 9 | 23 |