Os11g0668000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0668000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.26 | 0.562 | 6.68 | 1.92 | 1.84 | 1.26 | -0.975 | 0.123 | 0.446 | 22.6 | 71.18 | 1356 | -- | -- |
| 143.26 | 0.557 | 6.68 | 1.94 | 1.85 | 1.27 | -0.979 | -- | 0.452 | 22.6 | 71.13 | 1348 | -- | -- |
| 147.1 | 0.565 | 6.68 | 1.95 | 1.86 | 1.28 | -- | 0.234 | 0.447 | 22.6 | 71.56 | 1344 | -- | -- |
| 147.21 | 0.565 | 6.67 | 1.98 | 1.86 | 1.29 | -- | -- | 0.458 | 22.6 | 71.59 | 1348 | -- | -- |
| 320.67 | 0.839 | 6.66 | 1.85 | -- | 0.875 | -- | -0.415 | 0.297 | -- | 74.99 | 1540 | -- | -- |
| 203.36 | 0.669 | 6.72 | 1.68 | 1.77 | -- | -1.22 | -- | 0.257 | 22.4 | -- | -- | -- | -- |
| 209.36 | 0.678 | 6.72 | 1.72 | 1.78 | -- | -- | -- | 0.26 | 22.4 | -- | -- | -- | -- |
| 321.7 | 0.839 | 6.67 | 1.83 | -- | 0.873 | -- | -- | 0.292 | -- | 74.99 | 1540 | -- | -- |
| 235.05 | 0.714 | 6.71 | -- | 1.66 | 1.64 | -- | -- | 0.197 | 22.1 | 84.02 | 1612 | -- | -- |
| 402.68 | 0.938 | 6.67 | 1.75 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 287.78 | 0.794 | 6.76 | -- | 1.79 | -- | -- | -- | 0.0682 | 22.4 | -- | -- | -- | -- |
| 408.4 | 0.944 | 6.72 | -- | -- | 0.823 | -- | -- | 0.0331 | -- | 78 | 1561 | -- | -- |
| 483.8 | 1.03 | 6.72 | -- | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 7 | 135.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 12 | 135.79 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 24 | 136.64 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 63 | 138.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 116 | 140.69 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 117 | 140.76 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 126 | 141.02 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 138 | 141.34 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 301 | 142.94 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 303 | 142.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 435 | 143.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 440 | 143.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 580 | 144.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 594 | 144.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 604 | 144.84 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 675 | 145.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 682 | 145.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 683 | 145.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 769 | 145.70 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 782 | 145.75 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 856 | 145.90 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 882 | 145.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |