Os11g0667600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0667600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 283.37 | 0.791 | 5.97 | 0.847 | 0.179 | 3.1 | -0.386 | -3.39 | -0.263 | 11.6 | 27.1 | 5890 | -- | -- |
| 292.22 | 0.796 | 5.88 | 1.89 | 0.143 | 2.77 | -0.672 | -- | -0.0769 | 10.5 | 27.1 | 5919 | -- | -- |
| 283.96 | 0.785 | 5.97 | 0.861 | 0.177 | 3.1 | -- | -3.33 | -0.268 | 12 | 27.1 | 5894 | -- | -- |
| 291.4 | 0.795 | 5.87 | 1.9 | 0.188 | 2.83 | -- | -- | 0.00139 | 11.6 | 27.2 | 5899 | -- | -- |
| 285.94 | 0.788 | 5.98 | 0.801 | -- | 3.11 | -- | -3.51 | -0.287 | -- | 27.13 | 5894 | -- | -- |
| 565.2 | 1.11 | 5.71 | 3.05 | 0.133 | -- | -0.666 | -- | 0.612 | 11.9 | -- | -- | -- | -- |
| 567.12 | 1.12 | 5.71 | 3.03 | 0.136 | -- | -- | -- | 0.61 | 12.1 | -- | -- | -- | -- |
| 293.51 | 0.798 | 5.86 | 1.86 | -- | 2.86 | -- | -- | 0.0193 | -- | 27.2 | 5899 | -- | -- |
| 345.49 | 0.866 | 5.87 | -- | 0.257 | 3.27 | -- | -- | -0.434 | 10.3 | 24.9 | 10720 | -- | -- |
| 568.28 | 1.11 | 5.71 | 3.02 | -- | -- | -- | -- | 0.608 | -- | -- | -- | -- | -- |
| 808.43 | 1.33 | 5.78 | -- | 0.105 | -- | -- | -- | 0.273 | 10.5 | -- | -- | -- | -- |
| 323.78 | 0.838 | 6.17 | -- | -- | 3.58 | -- | -- | -1.37 | -- | 24.8 | 14346 | -- | -- |
| 809.1 | 1.33 | 5.79 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 278.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 282.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 16 | 283.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 18 | 283.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 22 | 283.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 27 | 283.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 34 | 285.16 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 71 | 288.90 | temperature | 20 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 110 | 289.71 | temperature | 20 | 14400 | > th | dose dependent | sin | 19 | NA |
| 358 | 293.11 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 361 | 293.14 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 377 | 293.27 | temperature | 20 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 400 | 293.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 429 | 293.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 431 | 293.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 446 | 293.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 21 |
| 618 | 294.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 621 | 294.80 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 656 | 294.90 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 672 | 294.97 | temperature | 25 | 14400 | > th | dose independent | sin | 18 | NA |
| 675 | 294.98 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 697 | 295.04 | temperature | 25 | 14400 | < th | dose independent | sin | 3 | NA |
| 742 | 295.15 | temperature | 25 | 14400 | > th | dose independent | sin | 3 | NA |
| 744 | 295.15 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 755 | 295.18 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 768 | 295.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 807 | 295.37 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 827 | 295.42 | temperature | 25 | 14400 | < th | dose independent | sin | 18 | NA |
| 837 | 295.47 | temperature | 15 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 859 | 295.54 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 996 | 295.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |