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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0666200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.0579) R2 : 0.463
β1 : 4.1 (0.217) R2dD : 0.474 R2D : 0.253
β2 : 0.707 (0.173) R2dC : 0.0299 R2C : -0.0814
β3 : -1.8 (0.278) R2dE : 0.0833 R2E : -0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.41 (0.13) R2dN8 : 0.213 R2N8 : -0.00289
σ : 1.06
deviance : 522.17
__
_____
C
peak time of C : 14.7
E
wheather : temperature
threshold : 19.7
memory length : 38
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
517.59 1.07 4.64 4.56 0.716 -1.93 -0.777 2.59 1.55 14.4 19.72 27 -- --
522.42 1.06 4.7 4.15 0.677 -1.74 -0.094 -- 1.43 14.8 19.66 39 -- --
519.22 1.06 4.66 4.51 0.754 -1.99 -- 2.19 1.52 14.6 19.84 38 -- --
522.17 1.06 4.7 4.1 0.707 -1.8 -- -- 1.41 14.7 19.7 38 -- --
538.85 1.08 4.69 4.22 -- -1.23 -- 1.55 1.38 -- 19.7 40 -- --
568.9 1.12 4.76 3.73 0.0331 -- -0.482 -- 1.11 11.3 -- -- -- --
569.82 1.12 4.77 3.72 0.0519 -- -- -- 1.11 14.6 -- -- -- --
541.22 1.08 4.72 3.96 -- -1.18 -- -- 1.29 -- 18.4 39 -- --
931.88 1.43 4.85 -- 0.103 -0.336 -- -- 0.742 13.8 19.7 38 -- --
569.98 1.12 4.77 3.71 -- -- -- -- 1.1 -- -- -- -- --
933.69 1.43 4.86 -- 0.0241 -- -- -- 0.692 4.72 -- -- -- --
931.87 1.42 4.87 -- -- -0.402 -- -- 0.682 -- 29.4 43 -- --
933.72 1.43 4.86 -- -- -- -- -- 0.693 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 486.26 wind 5.0 43200 < th dose independent rect. 15 17
2 486.70 wind 3.0 43200 > th dose dependent rect. 15 17
3 486.79 wind 3.0 43200 > th dose dependent rect. 14 19
5 486.96 wind 5.0 43200 > th dose independent rect. 15 17
7 487.09 wind 5.0 43200 < th dose independent rect. 14 19
18 487.95 wind 5.0 43200 > th dose independent rect. 14 19
31 488.63 humidity 90.0 14400 < th dose independent rect. 21 1
64 489.96 wind 9.0 43200 > th dose independent rect. 17 15
77 490.45 wind 3.0 43200 > th dose dependent sin 13 NA
79 490.53 wind 9.0 43200 > th dose dependent rect. 17 14
81 490.61 wind 5.0 43200 < th dose independent sin 14 NA
85 490.77 wind 9.0 43200 > th dose dependent sin 13 NA
98 491.04 wind 9.0 43200 > th dose independent sin 12 NA
104 491.26 wind 9.0 43200 > th dose dependent rect. 18 11
113 491.46 radiation 1.0 43200 < th dose independent rect. 2 4
115 491.47 radiation 1.0 43200 < th dose independent rect. 20 10
116 491.48 radiation 1.0 43200 < th dose independent rect. 4 2
120 491.49 wind 9.0 43200 < th dose independent rect. 17 15
123 491.50 wind 5.0 43200 > th dose independent sin 14 NA
134 491.59 radiation 1.0 43200 > th dose independent rect. 4 2
151 491.76 wind 7.0 43200 < th dose independent rect. 18 3
160 491.91 wind 3.0 43200 > th dose dependent rect. 17 10
168 492.00 wind 9.0 43200 < th dose dependent rect. 14 20
171 492.06 humidity 90.0 14400 > th dose independent rect. 21 1
175 492.11 atmosphere 995.0 43200 < th dose dependent rect. 15 1
180 492.18 wind 3.0 43200 > th dose dependent rect. 23 21
210 492.55 precipitation 0.1 43200 > th dose independent rect. 17 1
220 492.62 wind 1.0 43200 > th dose dependent rect. 4 15
228 492.72 precipitation 0.1 43200 < th dose independent rect. 17 1
229 492.72 precipitation 0.1 43200 < th dose dependent rect. 17 1
246 492.87 wind 9.0 43200 > th dose independent rect. 18 10
247 492.87 wind 9.0 43200 < th dose dependent rect. 4 15
251 492.92 wind 9.0 43200 < th dose independent sin 12 NA
264 492.97 wind 1.0 43200 > th dose dependent rect. 4 23
294 493.18 wind 9.0 43200 > th dose dependent rect. 17 7
303 493.21 wind 9.0 43200 < th dose dependent rect. 2 17
312 493.25 wind 1.0 43200 > th dose dependent rect. 4 19
329 493.32 wind 3.0 43200 > th dose dependent rect. 6 23
334 493.35 wind 9.0 43200 < th dose dependent rect. 4 23
346 493.38 wind 3.0 43200 > th dose dependent no NA NA
361 493.44 wind 9.0 43200 < th dose dependent rect. 22 21
373 493.48 wind 9.0 43200 < th dose dependent rect. 20 23
395 493.54 wind 1.0 43200 > th dose dependent rect. 17 23
415 493.61 wind 9.0 43200 < th dose dependent rect. 4 19
422 493.63 wind 9.0 43200 < th dose dependent rect. 24 23
428 493.66 wind 7.0 43200 > th dose independent rect. 18 3
467 493.78 wind 7.0 43200 > th dose dependent rect. 18 3
473 493.79 wind 9.0 43200 < th dose dependent no NA NA
515 493.92 wind 9.0 43200 < th dose dependent rect. 17 23
526 493.98 wind 5.0 43200 < th dose independent rect. 22 22
531 494.01 wind 9.0 43200 < th dose independent rect. 18 10
542 494.07 atmosphere 995.0 43200 < th dose independent rect. 14 2
548 494.08 wind 9.0 43200 < th dose dependent rect. 7 23
577 494.21 humidity 80.0 14400 > th dose independent rect. 17 1
582 494.23 wind 5.0 43200 < th dose independent rect. 1 19
655 494.58 wind 9.0 43200 > th dose independent rect. 18 6
659 494.58 wind 9.0 43200 > th dose dependent rect. 20 8
710 494.78 wind 9.0 43200 > th dose dependent rect. 20 1
715 494.80 wind 9.0 43200 < th dose dependent sin 13 NA
750 494.96 atmosphere 995.0 43200 > th dose independent rect. 13 3
751 494.96 wind 9.0 43200 > th dose dependent rect. 20 4
781 495.09 wind 5.0 43200 > th dose independent rect. 1 19
791 495.16 wind 5.0 43200 > th dose independent rect. 22 22
816 495.28 wind 7.0 43200 < th dose dependent sin 1 NA
832 495.33 wind 1.0 43200 > th dose dependent sin 1 NA
859 495.44 wind 5.0 43200 < th dose independent rect. 1 23
890 495.58 wind 5.0 43200 < th dose independent rect. 6 23
917 495.68 wind 5.0 43200 < th dose independent rect. 4 23
969 495.81 wind 5.0 43200 < th dose independent no NA NA