Os11g0666000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0666000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.63 | 0.45 | 9.26 | 1.37 | 1.58 | 0.858 | 0.0873 | -0.497 | 0.64 | 22.4 | 73 | 1242 | -- | -- |
| 92.17 | 0.447 | 9.26 | 1.33 | 1.58 | 0.833 | 0.181 | -- | 0.635 | 22.4 | 73 | 1242 | -- | -- |
| 91.66 | 0.446 | 9.26 | 1.37 | 1.58 | 0.857 | -- | -0.516 | 0.64 | 22.4 | 73 | 1242 | -- | -- |
| 92.23 | 0.447 | 9.26 | 1.29 | 1.58 | 0.825 | -- | -- | 0.622 | 22.4 | 72.3 | 1242 | -- | -- |
| 200.34 | 0.663 | 9.25 | 1.2 | -- | 0.644 | -- | 0.102 | 0.505 | -- | 73 | 1242 | -- | -- |
| 115.65 | 0.504 | 9.29 | 1.13 | 1.45 | -- | 0.000793 | -- | 0.511 | 22.1 | -- | -- | -- | -- |
| 115.65 | 0.504 | 9.29 | 1.13 | 1.45 | -- | -- | -- | 0.511 | 22.1 | -- | -- | -- | -- |
| 200.4 | 0.662 | 9.25 | 1.21 | -- | 0.645 | -- | -- | 0.505 | -- | 72 | 1529 | -- | -- |
| 135.16 | 0.541 | 9.3 | -- | 1.61 | 0.657 | -- | -- | 0.473 | 22.4 | 74 | 1227 | -- | -- |
| 241.82 | 0.727 | 9.25 | 1.15 | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
| 149.5 | 0.572 | 9.32 | -- | 1.45 | -- | -- | -- | 0.385 | 22.1 | -- | -- | -- | -- |
| 232.25 | 0.712 | 9.28 | -- | -- | 0.663 | -- | -- | 0.385 | -- | 73.98 | 1539 | -- | -- |
| 276.84 | 0.777 | 9.28 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 5 | 91.76 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 7 | 91.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 8 | 91.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 10 | 91.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 47 | 92.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 49 | 92.59 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 51 | 92.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 88 | 92.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 107 | 93.09 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 123 | 93.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 148 | 93.31 | humidity | 80 | 1440 | < th | dose dependent | sin | 18 | NA |
| 215 | 93.68 | humidity | 70 | 1440 | < th | dose independent | sin | 15 | NA |
| 224 | 93.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 256 | 93.86 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 267 | 93.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 296 | 94.01 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 306 | 94.04 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 346 | 94.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 352 | 94.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 385 | 94.35 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 389 | 94.37 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 12 |
| 469 | 94.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 492 | 94.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 566 | 94.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 622 | 94.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 659 | 94.95 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 676 | 95.01 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 693 | 95.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 703 | 95.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 740 | 95.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 785 | 95.31 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 19 |
| 821 | 95.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 872 | 95.52 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 889 | 95.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 908 | 95.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 941 | 95.70 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 958 | 95.74 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |