Os11g0665600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0665600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.78 | 0.734 | 4.21 | -1.85 | 0.426 | 2.69 | 1.12 | -7.92 | 0.0601 | 19.2 | 26.29 | 4828 | -- | -- |
| 254.11 | 0.742 | 4.14 | -0.436 | 0.589 | 1.99 | 1.22 | -- | -0.266 | 19.1 | 20.38 | 7475 | -- | -- |
| 246.76 | 0.732 | 4.21 | -1.93 | 0.431 | 2.74 | -- | -8.41 | 0.093 | 18.9 | 26.6 | 4819 | -- | -- |
| 257.5 | 0.747 | 4.14 | -0.462 | 0.591 | 1.99 | -- | -- | -0.267 | 18.8 | 20.25 | 7488 | -- | -- |
| 256.2 | 0.745 | 4.2 | -1.97 | -- | 2.79 | -- | -8.51 | 0.0788 | -- | 26.6 | 4876 | -- | -- |
| 376.24 | 0.909 | 3.99 | 0.62 | 0.59 | -- | 1.18 | -- | 0.419 | 19.5 | -- | -- | -- | -- |
| 380 | 0.913 | 3.98 | 0.594 | 0.596 | -- | -- | -- | 0.422 | 19.2 | -- | -- | -- | -- |
| 273.22 | 0.77 | 4.1 | -0.444 | -- | 2.02 | -- | -- | -0.163 | -- | 20.37 | 6349 | -- | -- |
| 258.65 | 0.749 | 4.1 | -- | 0.569 | 1.72 | -- | -- | -0.0746 | 18.9 | 24.64 | 7495 | -- | -- |
| 398.79 | 0.933 | 3.97 | 0.583 | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
| 389.3 | 0.923 | 4 | -- | 0.59 | -- | -- | -- | 0.356 | 19.3 | -- | -- | -- | -- |
| 272.72 | 0.769 | 4.09 | -- | -- | 1.78 | -- | -- | -0.123 | -- | 25 | 7757 | -- | -- |
| 407.76 | 0.943 | 3.98 | -- | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 243.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 247.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 15 | 248.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 16 | 248.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 21 | 248.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 27 | 252.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 10 |
| 29 | 252.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 19 |
| 33 | 252.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 37 | 252.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 47 | 253.14 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 49 | 253.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 59 | 253.86 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 73 | 254.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 20 |
| 80 | 254.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 81 | 254.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 119 | 254.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 173 | 255.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 178 | 255.38 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 223 | 255.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 236 | 255.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 303 | 256.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 316 | 256.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 322 | 256.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 323 | 256.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 337 | 256.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 428 | 257.61 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 440 | 257.85 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 564 | 259.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 586 | 259.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 594 | 259.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 15 |
| 606 | 259.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 607 | 259.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 608 | 259.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 628 | 259.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 629 | 259.68 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 640 | 259.73 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 652 | 259.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 657 | 259.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 667 | 259.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 674 | 259.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 675 | 259.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 682 | 259.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 704 | 260.09 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 710 | 260.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 740 | 260.24 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 765 | 260.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 772 | 260.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 840 | 260.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |