Os11g0664100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os11g0664100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 352.24 | 0.882 | 3.31 | -0.364 | 0.22 | 3.55 | 0.0777 | -7.98 | -0.393 | 15.1 | 25 | 275 | 0.975 | 4.05 |
| 358.7 | 0.882 | 3.31 | -0.169 | 0.202 | 3.5 | 0.208 | -- | -0.345 | 14.8 | 25.02 | 249 | 0.917 | 4.11 |
| 352.24 | 0.874 | 3.31 | -0.363 | 0.222 | 3.52 | -- | -7.93 | -0.395 | 15.1 | 25.01 | 275 | 0.964 | 4.06 |
| 358.76 | 0.882 | 3.3 | -0.162 | 0.204 | 3.46 | -- | -- | -0.336 | 15 | 25.01 | 251 | 0.85 | 4.15 |
| 354.78 | 0.877 | 3.31 | -0.361 | -- | 3.38 | -- | -7.74 | -0.376 | -- | 25.03 | 275 | 0.998 | 4.02 |
| 425.74 | 0.967 | 3.22 | -0.116 | 0.235 | -- | -0.712 | -- | 0.00543 | 6.02 | -- | -- | -- | -- |
| 426.93 | 0.968 | 3.22 | -0.121 | 0.233 | -- | -- | -- | 0.0085 | 6.5 | -- | -- | -- | -- |
| 361.04 | 0.885 | 3.3 | -0.182 | -- | 3.32 | -- | -- | -0.327 | -- | 25.01 | 258 | 0.883 | 4.15 |
| 359.39 | 0.883 | 3.3 | -- | 0.212 | 3.45 | -- | -- | -0.325 | 14.7 | 25 | 252 | 0.819 | 4.18 |
| 429.76 | 0.969 | 3.23 | -0.115 | -- | -- | -- | -- | 0.0133 | -- | -- | -- | -- | -- |
| 427.32 | 0.967 | 3.22 | -- | 0.232 | -- | -- | -- | 0.022 | 6.53 | -- | -- | -- | -- |
| 361.79 | 0.886 | 3.3 | -- | -- | 3.26 | -- | -- | -0.305 | -- | 25.02 | 258 | 0.866 | 4.16 |
| 430.11 | 0.968 | 3.22 | -- | -- | -- | -- | -- | 0.0261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 2 | 355.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 3 | 357.81 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 5 | 358.51 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 358.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 10 | 359.45 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 359.72 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 15 | 360.82 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 18 | 361.03 | temperature | 25.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 27 | 362.91 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 29 | 364.74 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 37 | 366.05 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 40 | 366.87 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 50 | 367.91 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 53 | 369.02 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 62 | 372.92 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 72 | 373.92 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 75 | 374.14 | wind | 5.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 79 | 374.28 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 85 | 374.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 86 | 374.49 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 88 | 374.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 91 | 374.49 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 95 | 374.49 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 104 | 374.49 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 105 | 374.49 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 106 | 374.49 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 115 | 374.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 119 | 374.50 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 121 | 374.50 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 122 | 374.50 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 126 | 374.50 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 128 | 374.50 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 133 | 374.50 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 134 | 374.50 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 140 | 374.54 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 141 | 374.54 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 144 | 374.62 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 149 | 374.84 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 154 | 375.06 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 194 | 376.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 195 | 376.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 214 | 380.65 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 217 | 380.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 222 | 381.44 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 226 | 381.64 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 237 | 382.80 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 242 | 382.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 250 | 383.40 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 257 | 383.66 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 261 | 383.82 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 263 | 383.86 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 302 | 385.08 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 22 |
| 314 | 385.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 21 |
| 316 | 385.46 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 326 | 385.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 339 | 385.76 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 341 | 385.80 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 343 | 385.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 353 | 385.96 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 11 | 10 |
| 357 | 385.99 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 363 | 386.06 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 377 | 386.32 | temperature | 25.0 | 720 | < th | dose independent | sin | 10 | NA |
| 392 | 386.49 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 410 | 386.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 411 | 386.63 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 415 | 386.70 | temperature | 25.0 | 720 | > th | dose independent | sin | 10 | NA |
| 448 | 386.95 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 465 | 387.00 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 525 | 387.35 | atmosphere | 995.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 592 | 387.69 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 618 | 387.91 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 619 | 387.92 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 647 | 388.16 | atmosphere | 995.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 663 | 388.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 23 |
| 691 | 388.43 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 776 | 389.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 780 | 389.82 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 23 |
| 797 | 390.19 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 805 | 390.28 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 864 | 390.94 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 899 | 391.22 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 17 |
| 908 | 391.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 955 | 391.76 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 21 |
| 978 | 391.93 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 987 | 392.02 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 10 |