FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0664000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.024) R2 : 0.176
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.583 (0.061) R2dC : 0.166 R2C : 0.163
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.118 (0.0504) R2dN8 : 0.0129 R2N8 : 0.00999
σ : 0.451
deviance : 93.12
__
_____
C
peak time of C : 8.09
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.27 0.429 3.45 -0.175 0.588 0.493 -0.884 -1.38 0.139 9.66 29.24 261 -- --
86.58 0.433 3.45 -0.171 0.589 0.485 -0.546 -- 0.136 9.44 29.23 259 -- --
85.81 0.431 3.45 -0.2 0.59 0.46 -- -0.959 0.136 9.48 28.38 259 -- --
87.69 0.436 3.45 -0.195 0.587 0.482 -- -- 0.133 9.53 29.23 255 -- --
93.82 0.451 3.44 -0.122 -- 0.592 -- -1.5 0.209 -- 28.99 744 -- --
90.74 0.447 3.46 -0.193 0.584 -- -0.638 -- 0.0942 8.02 -- -- -- --
91.95 0.449 3.46 -0.211 0.584 -- -- -- 0.0949 8.07 -- -- -- --
91.68 0.446 3.48 -0.276 -- 0.756 -- -- 0.0985 -- 5.97 930 -- --
88.68 0.439 3.45 -- 0.593 0.475 -- -- 0.15 9.59 27.8 249 -- --
110.64 0.491 3.48 -0.206 -- -- -- -- 0.102 -- -- -- -- --
93.12 0.451 3.46 -- 0.583 -- -- -- 0.118 8.09 -- -- -- --
92.45 0.448 3.46 -- -- 0.853 -- -- 0.17 -- 3.69 943 -- --
111.75 0.493 3.47 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.53 temperature 20 270 > th dose dependent rect. 5 3
2 78.21 temperature 25 10 > th dose independent rect. 7 2
6 78.71 temperature 25 90 > th dose independent rect. 7 1
14 79.41 atmosphere 1010 14400 < th dose independent rect. 6 1
16 79.62 temperature 25 4320 > th dose independent rect. 7 1
18 79.68 atmosphere 1010 14400 > th dose independent rect. 6 1
19 79.68 humidity 90 43200 > th dose dependent rect. 5 1
21 79.71 temperature 25 4320 < th dose independent rect. 7 1
27 79.97 wind 1 14400 < th dose dependent rect. 19 11
32 80.05 humidity 90 43200 > th dose independent rect. 20 4
34 80.07 humidity 90 43200 > th dose independent rect. 21 2
37 80.09 humidity 90 43200 > th dose independent rect. 19 6
46 80.19 wind 1 43200 < th dose dependent rect. 19 4
48 80.21 temperature 20 720 > th dose dependent rect. 21 11
50 80.23 wind 1 43200 > th dose independent rect. 19 7
55 80.28 wind 1 43200 < th dose independent rect. 19 7
57 80.29 wind 1 43200 < th dose dependent rect. 19 6
61 80.30 wind 1 14400 < th dose dependent rect. 17 13
64 80.31 temperature 20 4320 > th dose dependent rect. 6 1
79 80.43 humidity 90 43200 > th dose dependent rect. 21 3
80 80.43 wind 1 43200 < th dose dependent rect. 19 8
83 80.44 temperature 20 4320 > th dose dependent rect. 2 1
85 80.46 humidity 90 43200 > th dose dependent rect. 21 13
105 80.52 humidity 90 43200 > th dose dependent sin 8 NA
107 80.52 humidity 90 43200 > th dose dependent rect. 19 7
143 80.59 humidity 90 43200 > th dose dependent rect. 3 4
171 80.65 temperature 20 4320 > th dose dependent rect. 2 5
179 80.66 humidity 90 43200 < th dose independent rect. 18 7
190 80.67 humidity 90 43200 > th dose dependent rect. 1 8
206 80.71 temperature 20 4320 < th dose independent rect. 4 1
216 80.72 humidity 90 43200 > th dose dependent rect. 11 19
234 80.75 temperature 20 4320 > th dose independent rect. 4 1
321 80.89 atmosphere 1010 14400 < th dose independent rect. 8 1
322 80.89 radiation 10 43200 < th dose independent rect. 14 3
355 80.95 wind 1 43200 < th dose dependent rect. 19 1
364 80.96 radiation 10 43200 < th dose independent rect. 11 6
381 80.99 wind 1 43200 < th dose independent rect. 19 4
429 81.07 humidity 90 43200 > th dose dependent no NA NA
439 81.09 radiation 20 43200 < th dose independent rect. 12 1
542 81.21 humidity 90 43200 > th dose dependent rect. 5 23
577 81.25 humidity 90 43200 > th dose dependent rect. 3 23
585 81.26 radiation 20 43200 < th dose dependent rect. 11 22
590 81.27 radiation 40 43200 < th dose dependent rect. 11 5
601 81.29 humidity 90 43200 > th dose independent sin 16 NA
604 81.29 radiation 30 43200 < th dose dependent rect. 14 1
606 81.29 radiation 40 43200 < th dose dependent rect. 11 2
631 81.31 radiation 30 43200 > th dose independent sin 12 NA
652 81.32 radiation 10 43200 < th dose independent sin 19 NA
657 81.32 radiation 30 43200 > th dose independent rect. 15 19
659 81.32 radiation 30 43200 > th dose independent rect. 11 23
685 81.34 radiation 40 43200 > th dose independent rect. 11 3
704 81.35 temperature 25 10 > th dose dependent sin 9 NA
737 81.37 radiation 30 43200 < th dose dependent sin 20 NA
741 81.38 radiation 30 43200 > th dose independent no NA NA
746 81.38 radiation 30 43200 > th dose independent rect. 7 9
879 81.38 radiation 1 43200 > th dose dependent rect. 11 5
886 81.39 radiation 30 43200 > th dose independent sin 22 NA
887 81.39 radiation 40 43200 > th dose independent rect. 11 1
965 81.40 radiation 20 43200 < th dose dependent rect. 7 23
992 81.41 radiation 30 43200 < th dose dependent rect. 8 10